Gut Microbiome Analysis for Personalized Nutrition: The State of Science

Automating parameter selection to avoid implausible biological pathway models

(2021) Chris S. Magnano et al.   npj Systems Biology and Applications

Blue poo: impact of gut transit time on the gut microbiome using a novel marker

(2021) Francesco Asnicar et al.   GUT

Reconstruction of ancient microbial genomes from the human gut

(2021) Marsha C. Wibowo et al.   NATURE

Precision nutrition: A systematic literature review

(2021) Daniel Kirk et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Personalized Postprandial Glucose Response–Targeting Diet Versus Mediterranean Diet for Glycemic Control in Prediabetes

(2021) Orly Ben-Yacov et al.   DIABETES CARE

Restoration of dysbiotic human gut microbiome for homeostasis

(2021) Kunal Dixit et al.   LIFE SCIENCES

Current Applications of Absolute Bacterial Quantification in Microbiome Studies and Decision-Making Regarding Different Biological Questions

(2021) Xiaofan Wang et al.   Microorganisms

Role of the gut microbiome in chronic diseases: a narrative review

(2021) Amrita Vijay et al.   EUROPEAN JOURNAL OF CLINICAL NUTRITION

Gut microbiome a promising target for management of respiratory diseases

(2020) Riddhi Trivedi et al.   BIOCHEMICAL JOURNAL

Human postprandial responses to food and potential for precision nutrition

(2020) Sarah E. Berry et al.   NATURE MEDICINE

How to Count Our Microbes? The Effect of Different Quantitative Microbiome Profiling Approaches

(2020) Gianluca Galazzo et al.   Frontiers in Cellular and Infection Microbiology

Health and disease markers correlate with gut microbiome composition across thousands of people

(2020) Ohad Manor et al.   Nature Communications

The Healthy Microbiome—What Is the Definition of a Healthy Gut Microbiome?

(2020) Fergus Shanahan et al.   GASTROENTEROLOGY

Non-Invasive Blood Glucose Monitoring Technology: A Review

(2020) Liu Tang et al.   SENSORS

Intestinal parasitic infection alters bacterial gut microbiota in children

(2019) Miguel A. Toro-Londono et al.   PeerJ

The microbiome, cancer, and cancer therapy

(2019) Beth A. Helmink et al.   NATURE MEDICINE

Stereotypes About Enterotype: the Old and New Ideas

(2019) Mingyue Cheng et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans

(2019) Abigail J. Johnson et al.   Cell Host & Microbe

Language, numeracy and logic in microbiome science

(2019) Fergus Shanahan et al.   Nature Reviews Gastroenterology & Hepatology

Dysbiosis: from fiction to function

(2019) Connor R Tiffany et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

(2019) Adrian Tett et al.   Cell Host & Microbe

Advancing functional and translational microbiome research using meta-omics approaches

(2019) Xu Zhang et al.   Microbiome

Prevotella-to-Bacteroides ratio predicts body weight and fat loss success on 24-week diets varying in macronutrient composition and dietary fiber: results from a post-hoc analysis

(2018) Mads F. Hjorth et al.   INTERNATIONAL JOURNAL OF OBESITY

Current understanding of the human microbiome

(2018) Jack A Gilbert et al.   NATURE MEDICINE

Richness and ecosystem development across faecal snapshots of the gut microbiota

(2018) Gwen Falony et al.   Nature Microbiology

Interplay between food and gut microbiota in health and disease

(2018) Niels Banhos Danneskiold-Samsøe et al.   FOOD RESEARCH INTERNATIONAL

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

Supplementation of Diet With Galacto-oligosaccharides Increases Bifidobacteria, but Not Insulin Sensitivity, in Obese Prediabetic Individuals

(2017) Emanuel E. Canfora et al.   GASTROENTEROLOGY

Quantitative microbiome profiling links gut community variation to microbial load

(2017) Doris Vandeputte et al.   NATURE

Geography, Ethnicity or Subsistence-Specific Variations in Human Microbiome Composition and Diversity

(2017) Vinod K. Gupta et al.   Frontiers in Microbiology

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Personalized nutrition by prediction of glycaemic responses: fact or fantasy?

(2016) T M S Wolever   EUROPEAN JOURNAL OF CLINICAL NUTRITION

Stool frequency is associated with gut microbiota composition

(2016) Fatemeh Hadizadeh et al.   GUT

Gut microbiota, diet, and obesity-related disorders-The good, the bad, and the future challenges

(2016) Kevin J. Portune et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

(2016) Alexandra Zhernakova et al.   SCIENCE

Dysbiosis is not an answer

(2016) Scott W. Olesen et al.   Nature Microbiology

Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut

(2016) Henrik M. Roager et al.   Nature Microbiology

Personalized Nutrition by Prediction of Glycemic Responses

(2015) David Zeevi et al.   CELL

Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella

(2015) Petia Kovatcheva-Datchary et al.   Cell Metabolism

The Characterization of Feces and Urine: A Review of the Literature to Inform Advanced Treatment Technology

(2015) C. Rose et al.   CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY

Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates

(2015) Doris Vandeputte et al.   GUT

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Gut Microbiota Signatures Predict Host and Microbiota Responses to Dietary Interventions in Obese Individuals

(2014) Katri Korpela et al.   PLoS One

Dietary intervention impact on gut microbial gene richness

(2013) Aurélie Cotillard et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

(2009) Yuzhen Ye et al.   PLoS Computational Biology

Ileal brake: A sensible food target for appetite control. A review

(2008) P.W.J. Maljaars et al.   PHYSIOLOGY & BEHAVIOR