Frequency Changes in Terminal Alkynes Provide Strong, Sensitive, and Solvatochromic Raman Probes of Biochemical Environments

Alkyne-Tagged Raman Probes for Local Environmental Sensing by Hydrogen–Deuterium Exchange

(2022) Xiaotian Bi et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Transparent window 2D IR spectroscopy of proteins

(2021) Megan C. Thielges   JOURNAL OF CHEMICAL PHYSICS

Multiplexed live-cell profiling with Raman probes

(2021) Chen Chen et al.   Nature Communications

Multicolor Photoactivatable Raman Probes for Subcellular Imaging and Tracking by Cyclopropenone Caging

(2021) Jiajun Du et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Terminal Alkynes as Raman Probes of α‐Synuclein in Solution and in Cells

(2020) Jessica D. Flynn et al.   CHEMBIOCHEM

Imaging the Invisible ‐ Bioorthogonal Raman Probes for Imaging of Cells and Tissues

(2020) Georgette Azemtsop Matanfack et al.   Journal of Biophotonics

pKa Determination of a Histidine Residue in a Short Peptide Using Raman Spectroscopy

(2019) Brett H. Pogostin et al.   MOLECULES

Rational Design of an Acetylenic Infrared Probe with Enhanced Dipole Strength and Increased Vibrational Lifetime

(2019) Dorota Kossowska et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Tracking carrier protein motions with Raman spectroscopy

(2019) Samuel C. Epstein et al.   Nature Communications

Biological imaging of chemical bonds by stimulated Raman scattering microscopy

(2019) Fanghao Hu et al.   NATURE METHODS

Unnatural Chemical Biology: Research-Based Laboratory Course Utilizing Genetic Code Expansion

(2018) Kelsey M. Kean et al.   JOURNAL OF CHEMICAL EDUCATION

High-speed Raman imaging of cellular processes

(2016) Jun Ando et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Measuring Electric Fields and Noncovalent Interactions Using the Vibrational Stark Effect

(2015) Stephen D. Fried et al.   ACCOUNTS OF CHEMICAL RESEARCH

Site-Specific Infrared Probes of Proteins

(2015) Jianqiang Ma et al.   Annual Review of Physical Chemistry

Vibrational solvatochromism. III. Rigorous treatment of the dispersion interaction contribution

(2015) Bartosz Błasiak et al.   JOURNAL OF CHEMICAL PHYSICS

A Database of Dispersion-Induction DI, Electrostatic ES, and Hydrogen Bonding α1 and β1 Solvent Parameters and Some Applications to the Multiparameter Correlation Analysis of Solvent Effects

(2015) Christian Laurence et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Vibrational solvatochromism. II. A first-principle theory of solvation-induced vibrational frequency shift based on effective fragment potential method

(2014) Bartosz Błasiak et al.   JOURNAL OF CHEMICAL PHYSICS

Multicolor Live-Cell Chemical Imaging by Isotopically Edited Alkyne Vibrational Palette

(2014) Zhixing Chen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Live-cell imaging of alkyne-tagged small biomolecules by stimulated Raman scattering

(2014) Lu Wei et al.   NATURE METHODS

Molecular imaging of live cells by Raman microscopy

(2013) Almar F Palonpon et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Vibrational solvatochromism: Towards systematic approach to modeling solvation phenomena

(2013) Bartosz Błasiak et al.   JOURNAL OF CHEMICAL PHYSICS

A New Raman Spectroscopic Probe of Both the Protonation State and Noncovalent Interactions of Histidine Residues

(2013) Kevin W. Hoffman et al.   JOURNAL OF PHYSICAL CHEMISTRY A

A Strongly Absorbing Class of Non-Natural Labels for Probing Protein Electrostatics and Solvation with FTIR and 2D IR Spectroscopies

(2013) Ann Marie Woys et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Experimental Characterization of Electrostatic and Conformational Heterogeneity in an SH3 Domain

(2013) Ramkrishna Adhikary et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Raman and SERS microscopy for molecular imaging of live cells

(2013) Almar F Palonpon et al.   Nature Protocols

Mechanism of IAPP amyloid fibril formation involves an intermediate with a transient  -sheet

(2013) L. E. Buchanan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Carbon–Deuterium Bonds as Probes of Protein Thermal Unfolding

(2012) Wayne Yu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Structural and Sequence Analysis of the Human γD-Crystallin Amyloid Fibril Core Using 2D IR Spectroscopy, Segmental 13C Labeling, and Mass Spectrometry

(2012) Sean D. Moran et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Site-Specific Coupling of Hydration Water and Protein Flexibility Studied in Solution with Ultrafast 2D-IR Spectroscopy

(2012) John T. King et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A Solvatochromic Model Calibrates Nitriles’ Vibrational Frequencies to Electrostatic Fields

(2012) Sayan Bagchi et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Alkyne-Tag Raman Imaging for Visualization of Mobile Small Molecules in Live Cells

(2012) Hiroyuki Yamakoshi et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Two-dimensional IR spectroscopy and segmental 13C labeling reveals the domain structure of human  D-crystallin amyloid fibrils

(2012) S. D. Moran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental and Theoretical Spectroscopic Study of 310-Helical Peptides Using Isotopic Labeling to Evaluate Vibrational Coupling

(2011) Ahmed Lakhani et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Probing Local Environments with the Infrared Probe:l-4-Nitrophenylalanine

(2011) Emily E. Smith et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Covalently Bound Azido Groups Are Very Specific Water Sensors, Even in Hydrogen-Bonding Environments

(2011) Marta P. Wolfshorndl et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Carbon−Deuterium Bonds as Site-Specific and Nonperturbative Probes for Time-Resolved Studies of Protein Dynamics and Folding

(2011) Jörg Zimmermann et al.   Journal of Physical Chemistry Letters

Azido Homoalanine is a Useful Infrared Probe for Monitoring Local Electrostatistics and Side-Chain Solvation in Proteins

(2011) Jun-Ho Choi et al.   Journal of Physical Chemistry Letters

Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules

(2011) Matthias M. Waegele et al.   Journal of Physical Chemistry Letters

Imaging of EdU, an Alkyne-Tagged Cell Proliferation Probe, by Raman Microscopy

(2011) Hiroyuki Yamakoshi et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

2D IR Line Shapes Probe Ovispirin Peptide Conformation and Depth in Lipid Bilayers

(2010) Ann Marie Woys et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Decomposition of Vibrational Shifts of Nitriles into Electrostatic and Hydrogen-Bonding Effects

(2010) Aaron T. Fafarman et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Efforts Toward the Direct Experimental Characterization of Enzyme Microenvironments: Tyrosine100 in Dihydrofolate Reductase

(2009) Dan Groff et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Probing Protein Folding Using Site-Specifically Encoded Unnatural Amino Acids as FRET Donors with Tryptophan

(2009) Shigeki J. Miyake-Stoner et al.   BIOCHEMISTRY

Interpretation ofp-Cyanophenylalanine Fluorescence in Proteins in Terms of Solvent Exposure and Contribution of Side-Chain Quenchers: A Combined Fluorescence, IR and Molecular Dynamics Study

(2009) Humeyra Taskent-Sezgin et al.   BIOCHEMISTRY

2D IR photon echo study of the anharmonic coupling in the OCN region of phenyl cyanate

(2009) Matthew J. Tucker et al.   CHEMICAL PHYSICS LETTERS

C−D Modes of Deuterated Side Chain of Leucine as Structural Reporters via Dual-frequency Two-dimensional Infrared Spectroscopy

(2009) Sri Ram G. Naraharisetty et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Nitrile groups as vibrational probes of biomolecular structure and dynamics: an overview

(2009) Beth A. Lindquist et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Investigation of an unnatural amino acid for use as a resonance Raman probe: detection limits and solvent and temperature dependence of the νCN band of 4-cyanophenylalanine

(2008) Colin L. Weeks et al.   JOURNAL OF RAMAN SPECTROSCOPY