Article
Environmental Sciences
Haiping Gu, Jie Yan, Yuhao Liu, Xuewei Yu, Yan Feng, Xuanyi Yang, Su Shiung Lam, Mu. Naushad, Cheng Li, Christian Sonne
Summary: Bioaugmentation was used to obtain a microbiome capable of degrading polycyclic aromatic hydrocarbons (PAHs). The study found that acclimating microorganisms to soil supplemented with phenanthrene led to the enrichment of PAH-degrading bacteria, including Actinobacteriota and genera such as Streptomyces, Rhodococcus, Nocardioides, Sphingomonas, and Mycobacterium. The degradation efficiency of phenanthrene in aqueous and soil cultures inoculated with phenanthrene-acclimated soil was found to be high. This research provides theoretical and practical support for the bioremediation of PAHs in the environment.
ENVIRONMENTAL RESEARCH
(2023)
Article
Engineering, Environmental
Xiao Kong, Zhanbing Bai, Tuo Jin, Decai Jin, Jiangang Pan, Xiangyang Yu, Tomislav Cernava
Summary: Investigation in ten soil types from nine different geographical regions of China revealed significant differences in the degradation rates of DBP and bacterial responses to DBP contamination, suggesting the potential for biomarker development for DBP detection and future bioremediation strategies based on beneficial bacteria.
JOURNAL OF HAZARDOUS MATERIALS
(2022)
Article
Environmental Sciences
Xiaofang Shen, Yuyu Wan, Weihong Dong, Yujie Wei, Tong Li
Summary: Polycyclic aromatic hydrocarbons (PAHs) like naphthalene and phenanthrene are organic pollutants with toxic, carcinogenic, and teratogenic properties. Biodegradation is an effective method for their remediation. Indigenous microorganisms in riparian zones can remove PAHs, with naphthalene weakly promoting phenanthrene biodegradation. Factors such as initial concentration ratio, hydraulic gradient, and temperature influence the biodegradation process.
ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
(2021)
Article
Biochemistry & Molecular Biology
Tokuro Iwabuchi
Summary: Six phenanthrene-degrading bacteria were found in surface seawater from the western Pacific Ocean. They were identified as Sphingobium xenophagum and showed broader salinity ranges and higher phenanthrene-degrading activity under briny conditions compared to other Sphingomonas strains isolated from soil. This discovery demonstrates the wide distribution of S. xenophagum strains in marine environments and their adaptation to briny conditions.
CANADIAN JOURNAL OF MICROBIOLOGY
(2022)
Article
Engineering, Environmental
Jiayu Zhang, Xiaoyan Li, Huaxin Lei, Renxin Zhao, Wenhui Gan, Kaiyan Zhou, Bing Li
Summary: Biological treatment is an efficient and economical method to remove thiamphenicol (TAP) residues from the environment. The discovery of TAP-degrading bacteria and the decryption of its biodegradation mechanism is beneficial for enhancing the biological removal of TAP. Sphingomonas sp. CL5.1 was found to be capable of catabolizing TAP, degrading a significant amount of TAP in a short time period. Additionally, a novel metabolism pathway of TAP was constructed with potential enzymes predicted for TAP metabolism in strain CL5.1.
JOURNAL OF HAZARDOUS MATERIALS
(2022)
Article
Environmental Sciences
Jiao Sun, Zuotao Zhang, Hui Wang, Matthew J. Rogers, Haijiao Guo, Jianzhong He
Summary: The study demonstrated the effective anaerobic degradation of PAHs using the anaerobic co-culture DYM1 obtained from petroleum-polluted soil without the need for additional terminal electron acceptors. This provides a novel approach for recovering energy from toxic pollutants in the form of methane.
ENVIRONMENTAL POLLUTION
(2022)
Article
Environmental Sciences
Rafaela Tomazini, Flavia T. Saia, Bas van der Zaan, Guilherme M. Grosseli, Pedro S. Fadini, Raiane G. M. de Oliveira, Gustavo B. Gregoracci, Antonio Mozetto, Barbara M. A. van Vugt-Lussenburg, Abraham Brouwer, Alette A. M. Langenhoff
Summary: The degradation of Fipronil in Brazilian soil under oxic and anoxic conditions showed that different types of microbial communities were involved in the degradation process, leading to varying concentrations and degradation rates of specific metabolites.
WATER AIR AND SOIL POLLUTION
(2021)
Article
Environmental Sciences
Duantao Cao, Shuhong He, Xin Li, Lihong Shi, Feiyan Wang, Sumei Yu, Shiji Xu, Chao Ju, Hua Fang, Yunlong Yu
Summary: The bacterial strain Arthrobacter sp. C2 was isolated for atrazine degradation, showing degradation rates of 0.34, 1.94, and 18.64 mg/L/d at different concentrations. The optimal conditions for degradation were at 30°C and pH 7.0-9.0, and a metabolic pathway for atrazine degradation was proposed. The introduction of strain C2 into soil can enhance atrazine degradation and eliminate its toxic effects on wheat growth.
Article
Biotechnology & Applied Microbiology
Tao Li, Jia Xu, Amy L. L. Brower, Zhi-Jing Xu, Ying Xu, Jim C. C. Spain, Ning-Yi Zhou
Summary: This study reports the catabolic pathway for 1-nitronaphthalene and provides insights into the microbial degradation of nitrated polycyclic aromatic hydrocarbons (nitro-PAHs). The pathway evolved from an ancestral naphthalene catabolic pathway with minimal modification.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2023)
Article
Environmental Sciences
Srivalli Thimmarayan, Harshavardhan Mohan, Gaddapara Manasa, Karthi Natesan, Shanmugam Mahendran, Pavithra Muthukumar Sathya, Byung-Taek Oh, R. Ravi Kumar, Rangasamy Sigamani Gandhimathi, Arul Jayaprakash, Kamala-Kannan Seralathan
Summary: This study investigated the bacterial degradation of naphthalene (NPT) isolated from crude oil-contaminated soil. Bacillus sp. GN 3.4, a potential bacteria for NPT biodegradation, was isolated and the optimal conditions for NPT degradation were determined. The study suggests that Bacillus sp. GN 3.4 could potentially aid in bioremediation by eliminating NPT from the soil.
ENVIRONMENTAL RESEARCH
(2024)
Article
Chemistry, Organic
Varinder Kaur, Praveen Sharma
Summary: Biochar significantly influences soil properties, improving soil quality by reducing bulk density, increasing porosity, organic carbon content, and cation exchange capacity. It can be safely applied in agriculture to enhance soil health and crop yield.
POLYCYCLIC AROMATIC COMPOUNDS
(2021)
Article
Microbiology
Ze-Shen Liu, Ke-Huan Wang, Man Cai, Mei-Ling Yang, Xiao-Kang Wang, Hong-Lin Ma, Yi-Han Yuan, Lin-Huan Wu, De-Feng Li, Shuang-Jiang Liu
Summary: This study isolated and cultivated five unknown bacterial strains from polluted soil and conducted a taxonomic research, identifying them as new species. These bacteria showed resistance to heavy metals and the ability to metabolize aromatic compounds, indicating their adaptation to polluted soil environments.
FRONTIERS IN MICROBIOLOGY
(2023)
Article
Microbiology
Feiyue Lou, Charles Obinwanne Okoye, Lu Gao, Huifang Jiang, Yanfang Wu, Yongli Wang, Xia Li, Jianxiong Jiang
Summary: This study conducted whole-genome sequencing of two novel bacterial strains, Klebsiella michiganensis EF4 and K. oxytoca ETN19, to investigate their genomic functions and degradation pathways of phenanthrene and pyrene. The EF4 strain degraded approximately 80% of phenanthrene and 60% of pyrene after 28 days of cultivation. The combination of EF4 and ETN19 showed even higher phenanthrene degradation efficiency, following a first-level kinetic model with a half-life of approximately 6 days. The two bacterial genomes contained enzymes and gene clusters associated with PAHs degradation, as well as transcription factors that regulate the expression of PAHs degradation genes and enzymes.
MICROBIOLOGICAL RESEARCH
(2023)
Article
Chemistry, Multidisciplinary
Pingting Liu, Kaisheng Wang, Ling Xu, Yutao Rao, Mingbo Zhou, Atsuhiro Osuka, Jianxin Song
Summary: Naphthalene- and phenanthrene-fused [22]smaragdyrin BF2-complexes and the corresponding antiaromatic [20]smaragdyrin free bases were successfully synthesized through a series of reactions. The introduced fused structures altered the aromatic and antiaromatic properties of these compounds.
CHEMISTRY-AN ASIAN JOURNAL
(2023)
Article
Engineering, Environmental
Zuotao Zhang, Jiao Sun, Xiaoqiang Gong, Chongyang Wang, Hui Wang
Summary: The synergistic metabolism between anammox cultures and nitrate-reducers for anaerobic PAH biodegradation is explored in this study. It includes the identification of anammox culture and anammox bacterium that can perform nitrogen metabolism in the biodegradation processes, the inhibitory effect of PAH and nitrite on the activities of anammox culture and nitrate-reducers, and the synergistic metabolic processes. The results show that anammox culture containing Candidatus Kuenenia efficiently reduces nitrite accumulation and inorganic carbon emissions, and significantly promotes biodegradation efficiency.
Article
Chemistry, Organic
Ruchi Urana, Avni Dahiya, Praveen Sharma, Namita Singh
Summary: The research aims to evaluate the dissipation of Phenanthrene in sodic soil in the presence of two mucilagenous plant species and PGPR, with Gas Chromatography results indicating Trigonella foenum-graceum as more efficient than Brassica juncea, and PGPR having a synergistic effect on the phytoremediation of Phenanthrene.
POLYCYCLIC AROMATIC COMPOUNDS
(2021)
Review
Virology
Yogesh Chander, Ram Kumar, Nitin Khandelwal, Namita Singh, Brij Nandan Shringi, Sanjay Barua, Naveen Kumar
Summary: MAPKs play crucial roles in cellular processes, with p38 MAPK being activated by various cellular stresses and modulating downstream kinases and transcription factors. This pathway regulates functions such as cytoskeleton remodeling, cell cycle regulation, inflammation, antiviral response, and apoptosis.
REVIEWS IN MEDICAL VIROLOGY
(2021)
Article
Chemistry, Medicinal
Namita Ashish Singh, Pradeep Kumar, Jyoti, Naresh Kumar
Summary: The study highlights the potential of spices and herbs as antiviral agents and immunity boosters. Most respondents are using kadha to enhance immunity and believe that spices are helpful in treating coronavirus infections.
PHYTOTHERAPY RESEARCH
(2021)
Editorial Material
Biotechnology & Applied Microbiology
Gauri Garg Dhingra, Anjali Saxena, Aeshna Nigam, Princy Hira, Nirjara Singhvi, Shailly Anand, Jasvinder Kaur, Jaspreet Kaur, Ankita Dua, Vivek Negi, Vipin Gupta, Utkarsh Sood, Roshan Kumar, Sukanya Lal, Helianthous Verma, Mansi Verma, Priya Singh, Charu Dogra Rawat, Charu Tripathi, Chandni Talwar, Shekhar Nagar, Nitish Kumar Mahato, Om Prakash, Mona Singh, R. C. Kuhad, Yogendra Singh, Banwari Lal, Sunil Pabbi, Namita Singh, V. C. Kalia, Rup Lal
INDIAN JOURNAL OF MICROBIOLOGY
(2021)
Article
Genetics & Heredity
Jyoti Rani, Charu Chauhan, De Tanwee Das, Seena Kumari, Punita Sharma, Sanjay Tevatiya, Karan Patel, K. Ashwani Mishra, C. Kailash Pandey, Namita Singh, Rajnikant Dixit
Summary: The genetic differences in immune blood cells between An. stephensi and An. culicifacies mosquitoes were uncovered in this study, with An. stephensi showing more immune-related transcripts and An. culicifacies showing more other specific transcripts.
Article
Chemistry, Inorganic & Nuclear
Pardeep Kumar, Satya Dev, Sardul Singh Dhayal, Vishwas Acharya, Sanjeet Kumar, Sanjay Kumar, Namita Singh, Rakesh Dhar
Summary: The study demonstrates the fabrication of Mg and Se co-doped ZnO thin films using thermal evaporation technique, and investigates their microstructural, optical, and anti-bacterial properties. Increasing Mg and Se doping concentrations in ZnO thin films results in a significant decrement in band gap, while enhancing the anti-bacterial activity against Escherichia coli and Staphylococcus aureus.
INORGANIC CHEMISTRY COMMUNICATIONS
(2021)
Review
Pharmacology & Pharmacy
Dipendra Kumar Mahato, Madhu Kamle, Bharti Sharma, Shikha Pandhi, Sheetal Devi, Kajal Dhawan, Raman Selvakumar, Diwakar Mishra, Arvind Kumar, Shalini Arora, Namita Ashish Singh, Pradeep Kumar
Summary: Patulin, primarily produced by various fungal species, poses serious health and economic threats, with Penicillium expansum being the main culprit in pome fruits. Understanding its sources and biosynthetic mechanisms is crucial for designing effective management strategies against this toxin contamination. This review provides updated information on patulin occurrence in different foods, its harmful effects on human health and agriculture, and effective detection and control strategies.
Review
Biochemistry & Molecular Biology
Vaishali Lekchand Dasriya, Mrinal Samtiya, Tejpal Dhewa, Monica Puniya, Sanjeev Kumar, Soniya Ranveer, Vishu Chaudhary, Shilpa Vij, Pradip Behare, Namita Singh, Rotimi E. Aluko, Anil Kumar Puniya
Summary: Alzheimer's disease (AD) is the most common form of dementia in aging individuals, with a complex etiology involving modulation of the gut-brain axis and the use of probiotics to alleviate symptoms.
JOURNAL OF FOOD BIOCHEMISTRY
(2022)
Article
Chemistry, Organic
Suryakant Panchal, Rajneesh Jaryal, Ruchi Urana, Manju Bala Bishnoi, Namita Singh
Summary: A phenanthrene-degrading bacterial consortium was developed from petrochemical contaminated soil near an Indian Oil Corporation Limited refinery. By optimizing the physicochemical conditions, the phenanthrene degradation efficiency reached 89%.
POLYCYCLIC AROMATIC COMPOUNDS
(2023)
Article
Engineering, Environmental
Suryakant Panchal, Arpita Ghosh, Prerana Koti, Namita Singh
Summary: In this study, the bacterial diversity of the efficient PHE degrading consortium NS-PAH-2015-PNP-5 was explored using the Illumina Miseq platform. The results revealed a diverse bacterial community in NS-PAH-2015-PNP-5, with Proteobacteria and Pseudomonas spp. being the major members. Two culturable isolates were identified, and it was found that NS-PAH-2015-PNP-5 metabolized PHE through the protocatechuic acid pathway.
BIOREMEDIATION JOURNAL
(2022)
Article
Multidisciplinary Sciences
Jyoti Rani, Tanwee Das De, Charu Chauhan, Seena Kumari, Punita Sharma, Sanjay Tevatiya, Soumyananda Chakraborti, Kailash C. Pandey, Namita Singh, Rajnikant Dixit
Summary: This study provides a detailed characterization of a transferrin protein in mosquitoes and demonstrates its crucial role in the reproductive outcome of mosquitoes.
Article
Biochemistry & Molecular Biology
Yogesh Chander, Ram Kumar, Assim Verma, Nitin Khandelwal, Himanshu Nagori, Namita Singh, Shalini Sharma, Yash Pal, Apurvasinh Puvar, Rameshchandra Pandit, Nitin Shukla, Priyank Chavada, Bhupendra N. Tripathi, Sanjay Barua, Naveen Kumar
Summary: Inhibition of the p38-MNK1-eIF4E signaling pathway can suppress protein synthesis of buffalopox virus. Resistant mutants were selected through long-term sequential passages and genome editing showed the mechanism behind resistance acquisition.
MOLECULAR BIOLOGY AND EVOLUTION
(2022)