Soil depth and agricultural irrigation activities drive variation in microbial abundance and nitrogen cycling

Divergent gross nitrogen transformation paths in the topsoil and subsoil between abandoned and agricultural cultivation land in irrigated areas

(2020) Xiuhua Liu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil acidification modifies soil depth-microbiome relationships in a no-till wheat cropping system

(2020) Daniel C. Schlatter et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of human disturbance activities and environmental change factors on terrestrial nitrogen fixation

(2020) Mianhai Zheng et al.   GLOBAL CHANGE BIOLOGY

Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems

(2019) Shuo Jiao et al.   Microbiome

Impact of soil leachate on microbial biomass and diversity affected by plant diversity

(2019) Chao Zhang et al.   PLANT AND SOIL

Changes in nitrogen functional genes in soil profiles of grassland under long-term grazing prohibition in a semiarid area

(2019) Zilin Song et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Suppressed N fixation and diazotrophs after four decades of fertilization

(2019) Kunkun Fan et al.   Microbiome

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling

(2019) Jennifer E. Schmidt et al.   Microbiome

Location-dependent impacts of liming and crop rotation on bacterial communities in acid soils of the Pacific Northwest

(2018) Kurtis L. Schroeder et al.   APPLIED SOIL ECOLOGY

Nitrogen functional gene activity in soil profiles under progressive vegetative recovery after abandonment of agriculture at the Puding Karst Critical Zone Observatory, SW China

(2018) Dandan Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Long term farming systems affect soils potential for N 2 O production and reduction processes under denitrifying conditions

(2017) Hans-Martin Krause et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System

(2017) Manoeli Lupatini et al.   Frontiers in Microbiology

Ammonium fertilization causes a decoupling of ammonium cycling in a boreal forest

(2016) Wenlong Gao et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Evaluating the Contribution of Gut Microbiota to the Variation of Porcine Fatness with the Cecum and Fecal Samples

(2016) Maozhang He et al.   Frontiers in Microbiology

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies

(2016) Davide Francioli et al.   Frontiers in Microbiology

Nitrogen Cycling Potential of a Grassland Litter Microbial Community

(2015) Michaeline B. Nelson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Increasing aridity reduces soil microbial diversity and abundance in global drylands

(2015) Fernando T. Maestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil pH and biome are both key determinants of soil archaeal community structure

(2015) Binu M. Tripathi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Substrate and environmental controls on microbial assimilation of soil organic carbon: a framework for Earth system models

(2014) Xiaofeng Xu et al.   ECOLOGY LETTERS

Effect of grazing on the abundance of functional genes associated with N cycling in three types of grassland in Inner Mongolia

(2014) K. Ding et al.   JOURNAL OF SOILS AND SEDIMENTS

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Microbial functional genes involved in nitrogen fixation, nitrification and denitrification in forest ecosystems

(2014) David J. Levy-Booth et al.   SOIL BIOLOGY & BIOCHEMISTRY

pH dominates variation in tropical soil archaeal diversity and community structure

(2013) Binu M. Tripathi et al.   FEMS MICROBIOLOGY ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

A Coevolutionary Framework for Managing Disease-Suppressive Soils

(2011) Linda L. Kinkel et al.   Annual Review of Phytopathology

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Changes in Denitrifier Abundance, Denitrification Gene mRNA Levels, Nitrous Oxide Emissions, and Denitrification in Anoxic Soil Microcosms Amended with Glucose and Plant Residues

(2010) S. L. Henderson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2010) C. Will et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Beneficial bacteria of agricultural importance

(2010) Olubukola Oluranti Babalola   BIOTECHNOLOGY LETTERS

Life history determines biogeographical patterns of soil bacterial communities over multiple spatial scales

(2010) A. BISSETT et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Deep soil organic matter—a key but poorly understood component of terrestrial C cycle

(2010) Cornelia Rumpel et al.   PLANT AND SOIL

Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest

(2010) Diana R. Nemergut et al.   SOIL BIOLOGY & BIOCHEMISTRY

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree

(2009) Laurent Philippot et al.   ENVIRONMENTAL MICROBIOLOGY

The chemical and functional characterization of soil N and its biotic components

(2009) Paolo Nannipieri et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in Bacterial and Archaeal Community Structure and Functional Diversity along a Geochemically Variable Soil Profile

(2008) C. M. Hansel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE

Microbial Biogeography: From Taxonomy to Traits

(2008) J. L. Green et al.   SCIENCE