Genomic Landscape of Long Terminal Repeat Retrotransposons (LTR-RTs) and Solo LTRs as Shaped by Ectopic Recombination in Chicken and Zebra Finch

The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms

(2015) George P. Tiley et al.   BMC EVOLUTIONARY BIOLOGY

Low Levels of LTR Retrotransposon Deletion by Ectopic Recombination in the Gigantic Genomes of Salamanders

(2015) Matthew Blake Frahry et al.   JOURNAL OF MOLECULAR EVOLUTION

The Relations Between Recombination Rate and Patterns of Molecular Variation and Evolution in Drosophila

(2014) Brian Charlesworth et al.   Annual Review of Genetics

Population Genomics of Transposable Elements inDrosophila

(2014) Maite G. Barrón et al.   Annual Review of Genetics

Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor

(2014) Michael N Romanov et al.   BMC GENOMICS

Endogenous avian leukosis viral loci in the Red Jungle Fowl genome assembly

(2014) Bernhard Benkel et al.   POULTRY SCIENCE

Complex evolutionary trajectories of sex chromosomes across bird taxa

(2014) Q. Zhou et al.   SCIENCE

Comparative genomics reveals insights into avian genome evolution and adaptation

(2014) G. Zhang et al.   SCIENCE

Inference of the Protokaryotypes of Amniotes and Tetrapods and the Evolutionary Processes of Microchromosomes from Comparative Gene Mapping

(2013) Yoshinobu Uno et al.   PLoS One

Broad-scale phylogenomics provides insights into retrovirus-host evolution

(2013) A. Hayward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recombination Rates and Genomic Shuffling in Human and Chimpanzee—A New Twist in the Chromosomal Speciation Theory

(2012) Marta Farré et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recombination Drives Vertebrate Genome Contraction

(2012) Kiwoong Nam et al.   PLoS Genetics

Homoplastic microinversions and the avian tree of life

(2011) Edward L Braun et al.   BMC EVOLUTIONARY BIOLOGY

LTR Retrotransposons Contribute to Genomic Gigantism in Plethodontid Salamanders

(2011) Cheng Sun et al.   Genome Biology and Evolution

Repetitive DNA and next-generation sequencing: computational challenges and solutions

(2011) Todd J. Treangen et al.   NATURE REVIEWS GENETICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Regional differences in recombination hotspots between two chicken populations

(2010) Martin G Elferink et al.   BMC GENETICS

The recombination landscape of the zebra finch Taeniopygia guttata genome

(2010) N. Backstrom et al.   GENOME RESEARCH

Genome destabilization by homologous recombination in the germ line

(2010) Mariko Sasaki et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

(2010) Jianchang Du et al.   PLANT JOURNAL

Evolutionary stasis: the stable chromosomes of birds

(2010) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

The smallest avian genomes are found in hummingbirds

(2009) T. R. Gregory et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Endogenous retroviruses of the chicken genome

(2008) Ahsan Huda et al.   Biology Direct

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodes

(2008) ELIE S. DOLGIN et al.   Genetics Research

A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate

(2008) M. A.M. Groenen et al.   GENOME RESEARCH

The evolution of restricted recombination in sex chromosomes

(2008) Roberta Bergero et al.   TRENDS IN ECOLOGY & EVOLUTION