Root System Architecture and Omics Approaches for Belowground Abiotic Stress Tolerance in Plants

Root phenotypes for the future

(2022) Anna Amtmann et al.   PLANT CELL AND ENVIRONMENT

Ion transporters and their regulatory signal transduction mechanisms for salinity tolerance in plants

(2022) Shubham Joshi et al.   PHYSIOLOGIA PLANTARUM

Role of Wheat Phosphorus Starvation Tolerance 1 Genes in Phosphorus Acquisition and Root Architecture

(2022) Hina Abbas et al.   Genes

Drought Tolerant near Isogenic Lines (NILs) of Pusa 44 Developed through Marker Assisted Introgression of qDTY2.1 and qDTY3.1 Enhances Yield under Reproductive Stage Drought Stress

(2021) Priyanka Dwivedi et al.   Agriculture-Basel

Fructan Structure and Metabolism in Overwintering Plants

(2021) Midori Yoshida   Plants-Basel

Plasma membrane intrinsic protein SlPIP1;7 promotes root growth and enhances drought stress tolerance in transgenic tomato ( Solanum lycopersicum ) plants

(2021) Shuya Fan et al.   PLANT BREEDING

Comparative Root Transcriptomics Provide Insights into Drought Adaptation Strategies in Chickpea (Cicer arietinum L.)

(2020) Vijay Bhaskarla et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genetic Relationship and Structure Analysis of Root Growth Angle for Improvement of Drought Avoidance in Early and Mid-Early Maturing Rice Genotypes

(2020) Elssa Pandit et al.   Rice Science

Salt Tolerance Mechanisms of Plants

(2020) Eva van Zelm et al.   Annual Review of Plant Biology

Should Root Plasticity Be a Crop Breeding Target?

(2020) Hannah M. Schneider et al.   Frontiers in Plant Science

Highly dynamic, coordinated, and stage-specific profiles revealed by multi-omics integrative analysis during cassava tuberous root development

(2020) Zehong Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

Integrative omics approaches revealed a crosstalk among phytohormones during tuberous root development in cassava

(2020) Yoshinori Utsumi et al.   PLANT MOLECULAR BIOLOGY

Modeling root system growth around obstacles

(2020) Wencheng Jin et al.   Scientific Reports

Root‐omics for drought tolerance in cool‐season grain legumes

(2020) Jitendra Kumar et al.   PHYSIOLOGIA PLANTARUM

Full-length transcript sequencing and comparative transcriptomic analysis to evaluate the contribution of osmotic and ionic stress components towards salinity tolerance in the roots of cultivated alfalfa (Medicago sativa L.)

(2019) Dong Luo et al.   BMC PLANT BIOLOGY

Comparative Physiological and Metabolic Analysis Reveals a Complex Mechanism Involved in Drought Tolerance in Chickpea (Cicer arietinum L.) Induced by PGPR and PGRs

(2019) Naeem Khan et al.   Scientific Reports

Construction of a large-scale semi-field facility to study genotypic differences in deep root growth and resources acquisition

(2019) Simon Fiil Svane et al.   Plant Methods

Deeper roots associated with cooler canopies, higher NDVI and greater yield in three wheat populations grown on stored soil water

(2019) Xiaoxi Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cortical cell diameter is key to energy costs of root growth in wheat

(2019) Tino Colombi et al.   PLANT PHYSIOLOGY

Genetic variation in ZmTIP1 contributes to root hair elongation and drought tolerance in maize

(2019) Xiaomin Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic components of root architecture and anatomy adjustments to water‐deficit stress in spring barley

(2019) Benedict C. Oyiga et al.   PLANT CELL AND ENVIRONMENT

Systems genomics approaches provide new insights into Arabidopsis thaliana root growth regulation under combinatorial mineral nutrient limitation

(2019) Nadia Bouain et al.   PLoS Genetics

Root transcriptome analysis of Saccharum spontaneum uncovers key genes and pathways in response to low-temperature stress

(2019) S. Dharshini et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Genome-wide association study of drought tolerance and biomass allocation in wheat

(2019) Isack Mathew et al.   PLoS One

Integrated omics analysis of root-preferred genes across diverse rice varieties including Japonica and indica cultivars

(2018) Sunok Moon et al.   JOURNAL OF PLANT PHYSIOLOGY

Hypoxia and the ERFVII Transcription Factor HRE2 Promote Adventitious Root Elongation in Arabidopsis

(2018) Emese Eysholdt-Derzsó et al.   PLANT BIOLOGY

Natural Genetic Variation Shapes Root System Responses to Phytohormones in Arabidopsis

(2018) Daniela Ristova et al.   PLANT JOURNAL

Root cell wall solutions for crop plants in saline soils

(2018) Caitlin S. Byrt et al.   PLANT SCIENCE

Expression Patterns and Identified Protein-Protein Interactions Suggest That Cassava CBL-CIPK Signal Networks Function in Responses to Abiotic Stresses

(2018) Chunyan Mo et al.   Frontiers in Plant Science

iTRAQ-based quantitative proteomics analysis of cold stress-induced mechanisms in grafted watermelon seedlings

(2018) Xianfeng Shi et al.   Journal of Proteomics

Drought affects aquaporins gene expression in important pulse legume chickpea (Cicer arietinum L.)

(2018) Farrukh Azeem et al.   PAKISTAN JOURNAL OF BOTANY

Physiological mechanisms contributing to the QTL qDTY3.2 effects on improved performance of rice Moroberekan x Swarna BC2F3:4 lines under drought

(2018) Alexandre Grondin et al.   Rice

Early molecular events associated with nitrogen deficiency in rice seedling roots

(2018) Ping-Han Hsieh et al.   Scientific Reports

Transcriptional changes measured in rice roots after exposure to arsenite-contaminated sediments

(2017) Alexandra Brinke et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Identification of quantitative trait loci for seedling root traits from Tibetan semi-wild wheat (Triticum aestivum subsp. tibetanum)

(2017) Jian Ma et al.   GENOME

Genome-wide changes in microRNA expression during short and prolonged heat stress and recovery in contrasting rice cultivars

(2017) Satendra K. Mangrauthia et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular Dissection of a Genomic Region Governing Root Traits Associated with Drought Tolerance Employing a Combinatorial Approach of QTL Mapping and RNA-seq in Rice

(2017) Santosh Patil et al.   PLANT MOLECULAR BIOLOGY REPORTER

Regulation of Root Traits for Internal Aeration and Tolerance to Soil Waterlogging-Flooding Stress

(2017) Takaki Yamauchi et al.   PLANT PHYSIOLOGY

MsmiR156 affects global gene expression and promotes root regenerative capacity and nitrogen fixation activity in alfalfa

(2017) Banyar Aung et al.   TRANSGENIC RESEARCH

Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation

(2017) Coline Balzergue et al.   Nature Communications

Fine Mapping of QUICK ROOTING 1 and 2 , Quantitative Trait Loci Increasing Root Length in Rice

(2017) Yuka Kitomi et al.   G3-Genes Genomes Genetics

Comparative Metabolome Profile between Tobacco and Soybean Grown under Water-Stressed Conditions

(2017) Roel C. Rabara et al.   Biomed Research International

Moderate Drought Stress Affected Root Growth and Grain Yield in Old, Modern and Newly Released Cultivars of Winter Wheat

(2017) Yan Fang et al.   Frontiers in Plant Science

Transcriptome Analysis of Rice Seedling Roots in Response to Potassium Deficiency

(2017) Xiaoqin Zhang et al.   Scientific Reports

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

Modeling halotropism: a key role for root tip architecture and reflux loop remodeling in redistributing auxin

(2016) Thea van den Berg et al.   DEVELOPMENT

Salinity-induced reduction in root surface area and changes in major root and shoot traits at the phytomer level in wheat

(2016) Arif Hasan Khan Robin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Temperature-compensated cell production rate and elongation zone length in the root ofArabidopsis thaliana

(2016) Xiaoli Yang et al.   PLANT CELL AND ENVIRONMENT

RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation

(2016) Christian Jeudy et al.   Plant Methods

Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis inArabidopsis thaliana

(2016) Xiaoli Li et al.   PLANT PHYSIOLOGY

Grasses suppress shoot-borne roots to conserve water during drought

(2016) Jose Sebastian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root transcriptomes of two acidic soil adapted Indica rice genotypes suggest diverse and complex mechanism of low phosphorus tolerance

(2016) Wricha Tyagi et al.   PROTOPLASMA

Canopy Temperature and Vegetation Indices from High-Throughput Phenotyping Improve Accuracy of Pedigree and Genomic Selection for Grain Yield in Wheat

(2016) Jessica Rutkoski et al.   G3-Genes Genomes Genetics

Methodology for High-Throughput Field Phenotyping of Canopy Temperature Using Airborne Thermography

(2016) David M. Deery et al.   Frontiers in Plant Science

Genomic Regions Associated with Root Traits under Drought Stress in Tropical Maize (Zea mays L.)

(2016) P. H. Zaidi et al.   PLoS One

Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat

(2015) Jonathan A. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide analysis reveals phytohormone action during cassava storage root initiation

(2015) Punchapat Sojikul et al.   PLANT MOLECULAR BIOLOGY

Does Morphological and Anatomical Plasticity during the Vegetative Stage Make Wheat More Tolerant of Water Deficit Stress Than Rice?

(2015) Niteen N. Kadam et al.   PLANT PHYSIOLOGY

Ethylene Response Factors: A Key Regulatory Hub in Hormone and Stress Signaling

(2015) Maren Müller et al.   PLANT PHYSIOLOGY

Wild barley introgression lines revealed novel QTL alleles for root and related shoot traits in the cultivated barley (Hordeum vulgareL.)

(2014) Ali Ahmad Naz et al.   BMC GENETICS

Phosphoproteomics Reveals the Effect of Ethylene in Soybean Root under Flooding Stress

(2014) Xiaojian Yin et al.   JOURNAL OF PROTEOME RESEARCH

The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root Development

(2014) C. Manzano et al.   PLANT PHYSIOLOGY

Proteomic and Metabolomic Analyses of Soybean Root Tips Under Flooding Stress

(2014) Setsuko Komatsu et al.   PROTEIN AND PEPTIDE LETTERS

Identification of Nuclear Proteins in Soybean Under Flooding Stress using Proteomic Technique

(2014) Myeong Oh et al.   PROTEIN AND PEPTIDE LETTERS

Field Phenotyping of Soybean Roots for Drought Stress Tolerance

(2014) Berhanu Fenta et al.   Agronomy-Basel

Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems

(2013) Jonathan P. Lynch   ANNALS OF BOTANY

LATERAL ROOTLESS2, a Cyclophilin Protein, Regulates Lateral Root Initiation and Auxin Signaling Pathway in Rice

(2013) Huakun Zheng et al.   Molecular Plant

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions

(2013) Yusaku Uga et al.   NATURE GENETICS

OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation

(2013) Bo Kang et al.   PLANT JOURNAL

QTL for root angle and number in a population developed from bread wheats (Triticum aestivum) with contrasting adaptation to water-limited environments

(2013) Jack Christopher et al.   THEORETICAL AND APPLIED GENETICS

Plant tolerance to high temperature in a changing environment: scientific fundamentals and production of heat stress-tolerant crops

(2013) Craita E. Bita et al.   Frontiers in Plant Science

Comparative proteome analysis of drought-sensitive and drought-tolerant rapeseed roots and their hybrid F1 line under drought stress

(2012) Payam Pour Mohammadi et al.   AMINO ACIDS

Clustered metallothionein genes are co-regulated in rice and ectopic expression of OsMT1e-P confers multiple abiotic stress tolerance in tobacco via ROS scavenging

(2012) Gautam Kumar et al.   BMC PLANT BIOLOGY

Mapping QTLs for seedling root traits in a doubled haploid wheat population under different water regimes

(2012) Xiulin Liu et al.   EUPHYTICA

The role of flavonoids in root-rhizosphere signalling: opportunities and challenges for improving plant-microbe interactions

(2012) S. Hassan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

Spatial distribution and phenotypic variation in root cortical aerenchyma of maize (Zea mays L.)

(2012) Amy L. Burton et al.   PLANT AND SOIL

Root biology and genetic improvement for drought avoidance in rice

(2011) Veeresh R.P. Gowda et al.   FIELD CROPS RESEARCH

Proteomics Techniques for the Development of Flood Tolerant Crops

(2011) Setsuko Komatsu et al.   JOURNAL OF PROTEOME RESEARCH

Signal transduction during cold, salt, and drought stresses in plants

(2011) Guo-Tao Huang et al.   MOLECULAR BIOLOGY REPORTS

Transcriptional responses to flooding stress in roots including hypocotyl of soybean seedlings

(2011) Yohei Nanjo et al.   PLANT MOLECULAR BIOLOGY

Lysigenous aerenchyma formation involves non-apoptotic programmed cell death in rice (Oryza sativa L.) roots

(2011) Rohit Joshi et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Comprehensive expression analysis suggests overlapping and specific roles of rice glutathione S-transferase genes during development and stress responses

(2010) Mukesh Jain et al.   BMC GENOMICS

Nitrate-Regulated Auxin Transport by NRT1.1 Defines a Mechanism for Nutrient Sensing in Plants

(2010) Gabriel Krouk et al.   DEVELOPMENTAL CELL

Proteomic analysis of cucumber seedling roots subjected to salt stress

(2010) Chang-Xia Du et al.   PHYTOCHEMISTRY

Quantitative proteomic analyses of crop seedlings subjected to stress conditions; a commentary

(2010) Yohei Nanjo et al.   PHYTOCHEMISTRY

The Compact Root Architecture1 Gene Regulates Lignification, Flavonoid Production, and Polar Auxin Transport in Medicago truncatula

(2010) C. Laffont et al.   PLANT PHYSIOLOGY

Root-Specific Expression of OsNAC10 Improves Drought Tolerance and Grain Yield in Rice under Field Drought Conditions

(2010) J. S. Jeong et al.   PLANT PHYSIOLOGY

Hypoxia induced non-apoptotic cellular changes during aerenchyma formation in rice (Oryza sativa L.) roots

(2010) Rohit Joshi et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Analysis of Plasma Membrane Proteome in Soybean and Application to Flooding Stress Response

(2009) Setsuko Komatsu et al.   JOURNAL OF PROTEOME RESEARCH

A Proteomic Study of the Response to Salinity and Drought Stress in an Introgression Strain of Bread Wheat

(2009) Zhenying Peng et al.   MOLECULAR & CELLULAR PROTEOMICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Chilling stress-induced proteomic changes in rice roots

(2008) Dong-Gi Lee et al.   JOURNAL OF PLANT PHYSIOLOGY