Comparison of Changes in Gut Microbiota in Wild Boars and Domestic Pigs Using 16S rRNA Gene and Metagenomics Sequencing Technologies

A Comprehensive Review on the Role of the Gut Microbiome in Human Neurological Disorders

(2022) Shokufeh Ghasemian Sorboni et al.   CLINICAL MICROBIOLOGY REVIEWS

Microbiome risk profiles as biomarkers for inflammatory and metabolic disorders

(2022) Amira Metwaly et al.   Nature Reviews Gastroenterology & Hepatology

Gut microbiota-derived bile acids in intestinal immunity, inflammation, and tumorigenesis

(2022) Jie Cai et al.   Cell Host & Microbe

The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology

(2021) Jinuk Jeong et al.   Scientific Reports

Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome

(2021) Congying Chen et al.   Nature Communications

Characterization of the bacterial microbiota composition and evolution at different intestinal tract in wild pigs (Sus scrofa ussuricus)

(2020) Guangli Yang et al.   PeerJ

The host-associated archaeome

(2020) Guillaume Borrel et al.   NATURE REVIEWS MICROBIOLOGY

Comparison of the fecal microbiomes of healthy and diarrheic captive wild boar

(2020) Bi Wang et al.   MICROBIAL PATHOGENESIS

A great-ape view of the gut microbiome

(2019) Alex H. Nishida et al.   NATURE REVIEWS GENETICS

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Deciphering the Chemical Lexicon of Host–Gut Microbiota Interactions

(2019) Gael R. Nicolas et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

(2019) Brian P Alcock et al.   NUCLEIC ACIDS RESEARCH

Comparative analysis of the fecal microbiota from different species of domesticated and wild suids

(2019) Florencia Correa-Fiz et al.   Scientific Reports

Comparative Study of Gut Microbiota in Wild and Captive Giant Pandas (Ailuropoda melanoleuca)

(2019) Wei Guo et al.   Genes

Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics

(2018) Simon Ardui et al.   NUCLEIC ACIDS RESEARCH

Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

(2018) Joshua P. Earl et al.   Microbiome

MOCAT2: a metagenomic assembly, annotation and profiling framework

(2016) Jens Roat Kultima et al.   BIOINFORMATICS

Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification

(2016) Josef Wagner et al.   BMC MICROBIOLOGY

The effect of heritability and host genetics on the gut microbiota and metabolic syndrome

(2016) Mi Young Lim et al.   GUT

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

(2016) Dinghua Li et al.   METHODS

Diet–microbiota interactions as moderators of human metabolism

(2016) Justin L. Sonnenburg et al.   NATURE

Association of host genome with intestinal microbial composition in a large healthy cohort

(2016) Williams Turpin et al.   NATURE GENETICS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Human Intestinal Microbiome in Health and Disease

(2016) Susan V. Lynch et al.   NEW ENGLAND JOURNAL OF MEDICINE

Hominid superorganisms

(2016) J. A. Segre et al.   SCIENCE

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

The structure and diversity of human, animal and environmental resistomes

(2016) Chandan Pal et al.   Microbiome

A reference gene catalogue of the pig gut microbiome

(2016) Liang Xiao et al.   Nature Microbiology

Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae

(2015) Kazunari Ushida et al.   ANIMAL SCIENCE JOURNAL

Dietary supplementation of a mixture of Lactobacillus strains enhances performance of broiler chickens raised under heat stress conditions

(2015) Mohammad Faseleh Jahromi et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes

(2015) Inés Martínez et al.   Cell Reports

Erratum to: Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering

(2015) Oscar Franzén et al.   Microbiome

Genome-Wide Association Studies of the Human Gut Microbiota

(2015) Emily R. Davenport et al.   PLoS One

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

The Suckling Piglet as an Agrimedical Model for the Study of Pediatric Nutrition and Metabolism

(2013) Jack Odle et al.   Annual Review of Animal Biosciences

The effects of supplementing varying molecular weights of chitooligosaccharide on performance, selected microbial populations and nutrient digestibility in the weaned pig

(2012) A. M. Walsh et al.   Animal

Improving PacBio Long Read Accuracy by Short Read Alignment

(2012) Kin Fai Au et al.   PLoS One

Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution

(2012) K. E. Langergraber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Host–microbe interactions that facilitate gut colonization by commensal bifidobacteria

(2012) Marco Ventura et al.   TRENDS IN MICROBIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Evolutionary History of Chimpanzees Inferred from Complete Mitochondrial Genomes

(2010) A. Bjork et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nutritional programming of gastrointestinal tract development. Is the pig a good model for man?

(2010) Paul Guilloteau et al.   NUTRITION RESEARCH REVIEWS

Limiting amino acids for growing lambs fed a diet low in ruminally undegradable protein1

(2008) J. van E. Nolte et al.   JOURNAL OF ANIMAL SCIENCE

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE