Site effects how-to and when: An overview of retrospective techniques to accommodate site effects in multi-site neuroimaging analyses
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Site effects how-to and when: An overview of retrospective techniques to accommodate site effects in multi-site neuroimaging analyses
Authors
Keywords
-
Journal
Frontiers in Neurology
Volume 13, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2022-10-31
DOI
10.3389/fneur.2022.923988
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- ENIGMA HALFpipe : Interactive, reproducible, and efficient analysis for resting‐state and task‐based fMRI data
- (2022) Lea Waller et al. HUMAN BRAIN MAPPING
- Brain charts for the human lifespan
- (2022) R. A. I. Bethlehem et al. NATURE
- A comparison of methods to harmonize cortical thickness measurements across scanners and sites
- (2022) Delin Sun et al. NEUROIMAGE
- A guide to ComBat harmonization of imaging biomarkers in multicenter studies
- (2021) Fanny Orlhac et al. JOURNAL OF NUCLEAR MEDICINE
- A transfer learning approach to facilitate ComBat-based harmonization of multicentre radiomic features in new datasets
- (2021) Ronrick Da-ano et al. PLoS One
- Biased accuracy in multisite machine-learning studies due to incomplete removal of the effects of the site
- (2021) Aleix Solanes et al. PSYCHIATRY RESEARCH-NEUROIMAGING
- Mitigating site effects in covariance for machine learning in neuroimaging data
- (2021) Andrew A. Chen et al. HUMAN BRAIN MAPPING
- Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory
- (2021) Lianrui Zuo et al. NEUROIMAGE
- Warped Bayesian linear regression for normative modelling of big data
- (2021) Charlotte J. Fraza et al. NEUROIMAGE
- DRIT++: Diverse Image-to-Image Translation via Disentangled Representations
- (2020) Hsin-Ying Lee et al. INTERNATIONAL JOURNAL OF COMPUTER VISION
- ENIGMA and Global Neuroscience: A Decade of Large-Scale Studies of the Brain in Health and Disease Across More Than 40 Countries
- (2020) Paul Thompson BIOLOGICAL PSYCHIATRY
- The biological classification of mental disorders (BeCOME) study: a protocol for an observational deep-phenotyping study for the identification of biological subtypes
- (2020) Tanja M. Brückl et al. BMC Psychiatry
- Scanner invariant representations for diffusion MRI harmonization
- (2020) Daniel Moyer et al. MAGNETIC RESONANCE IN MEDICINE
- Increased power by harmonizing structural MRI site differences with the ComBat batch adjustment method in ENIGMA
- (2020) Joaquim Radua et al. NEUROIMAGE
- The UK Biobank imaging enhancement of 100,000 participants: rationale, data collection, management and future directions
- (2020) Thomas J. Littlejohns et al. Nature Communications
- Performance comparison of modified ComBat for harmonization of radiomic features for multicenter studies
- (2020) R. Da-ano et al. Scientific Reports
- The Brain Chart of Aging: Machine‐learning analytics reveals links between brain aging, white matter disease, amyloid burden, and cognition in the iSTAGING consortium of 10,216 harmonized MR scans
- (2020) Mohamad Habes et al. Alzheimers & Dementia
- How can we combat multicenter variability in MR radiomics? Validation of a correction procedure
- (2020) Fanny Orlhac et al. EUROPEAN RADIOLOGY
- Individual deviations from normative models of brain structure in a large cross-sectional schizophrenia cohort
- (2020) Jinglei Lv et al. MOLECULAR PSYCHIATRY
- Longitudinal ComBat: A method for harmonizing longitudinal multi-scanner imaging data
- (2020) Joanne C. Beer et al. NEUROIMAGE
- Neuroharmony: A new tool for harmonizing volumetric MRI data from unseen scanners
- (2020) Rafael Garcia-Dias et al. NEUROIMAGE
- Training confounder-free deep learning models for medical applications
- (2020) Qingyu Zhao et al. Nature Communications
- Deep learning-based unlearning of dataset bias for MRI harmonisation and confound removal
- (2020) Nicola K. Dinsdale et al. NEUROIMAGE
- Individual differences v. the average patient: mapping the heterogeneity in ADHD using normative models
- (2019) Thomas Wolfers et al. PSYCHOLOGICAL MEDICINE
- Cross-scanner and cross-protocol diffusion MRI data harmonisation: A benchmark database and evaluation of algorithms
- (2019) Chantal MW. Tax et al. NEUROIMAGE
- Precision diagnostics based on machine learning-derived imaging signatures
- (2019) Christos Davatzikos et al. MAGNETIC RESONANCE IMAGING
- DeepHarmony: A deep learning approach to contrast harmonization across scanner changes
- (2019) Blake E. Dewey et al. MAGNETIC RESONANCE IMAGING
- Conceptualizing mental disorders as deviations from normative functioning
- (2019) Andre F. Marquand et al. MOLECULAR PSYCHIATRY
- MR‐based age‐related effects on the striatum, globus pallidus, and thalamus in healthy individuals across the adult lifespan
- (2019) Stephanie Tullo et al. HUMAN BRAIN MAPPING
- Bias Introduced by Multiple Head Coils in MRI Research: An 8 Channel and 32 Channel Coil Comparison
- (2019) Jessica L. Panman et al. Frontiers in Neuroscience
- Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan
- (2019) Raymond Pomponio et al. NEUROIMAGE
- Alternative empirical Bayes models for adjusting for batch effects in genomic studies
- (2018) Yuqing Zhang et al. BMC BIOINFORMATICS
- A comparison of manual tracing and FreeSurfer for estimating hippocampal volume over the adult lifespan
- (2018) Mike F Schmidt et al. HUMAN BRAIN MAPPING
- Harmonization of cortical thickness measurements across scanners and sites
- (2018) Jean-Philippe Fortin et al. NEUROIMAGE
- Mapping the Heterogeneous Phenotype of Schizophrenia and Bipolar Disorder Using Normative Models
- (2018) Thomas Wolfers et al. JAMA Psychiatry
- Different pre-scanning instructions induce distinct psychological and resting brain states during functional magnetic resonance imaging
- (2017) Toshikazu Kawagoe et al. EUROPEAN JOURNAL OF NEUROSCIENCE
- Predictive modelling using neuroimaging data in the presence of confounds
- (2017) Anil Rao et al. NEUROIMAGE
- Harmonization of multi-site diffusion tensor imaging data
- (2017) Jean-Philippe Fortin et al. NEUROIMAGE
- Cross-validation failure: Small sample sizes lead to large error bars
- (2017) Gaël Varoquaux NEUROIMAGE
- Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses
- (2015) Vegard Nygaard et al. BIOSTATISTICS
- Removing batch effects from purified plasma cell gene expression microarrays with modified ComBat
- (2015) Caleb K Stein et al. BMC BIOINFORMATICS
- Motion artifacts in MRI: A complex problem with many partial solutions
- (2015) Maxim Zaitsev et al. JOURNAL OF MAGNETIC RESONANCE IMAGING
- From estimating activation locality to predicting disorder: A review of pattern recognition for neuroimaging-based psychiatric diagnostics
- (2015) Thomas Wolfers et al. NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS
- UK Biobank: An Open Access Resource for Identifying the Causes of a Wide Range of Complex Diseases of Middle and Old Age
- (2015) Cathie Sudlow et al. PLOS MEDICINE
- Multicenter Voxel-Based Morphometry Mega-Analysis of Structural Brain Scans in Obsessive-Compulsive Disorder
- (2013) Stella J. de Wit et al. AMERICAN JOURNAL OF PSYCHIATRY
- Within-subject template estimation for unbiased longitudinal image analysis
- (2012) Martin Reuter et al. NEUROIMAGE
- The Effects of FreeSurfer Version, Workstation Type, and Macintosh Operating System Version on Anatomical Volume and Cortical Thickness Measurements
- (2012) Ed H. B. M. Gronenschild et al. PLoS One
- Automatic identification of landmarks for standard slice positioning in brain MRI
- (2011) Ali Iskurt et al. JOURNAL OF MAGNETIC RESONANCE IMAGING
- Correction of geometric distortion in fMRI data
- (2011) Peter Jezzard NEUROIMAGE
- Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium
- (2009) Bruce M. Psaty et al. Circulation-Cardiovascular Genetics
- Complex brain networks: graph theoretical analysis of structural and functional systems
- (2009) Ed Bullmore et al. NATURE REVIEWS NEUROSCIENCE
- MRI-derived measurements of human subcortical, ventricular and intracranial brain volumes: Reliability effects of scan sessions, acquisition sequences, data analyses, scanner upgrade, scanner vendors and field strengths
- (2009) Jorge Jovicich et al. NEUROIMAGE
- Neurodegenerative Diseases Target Large-Scale Human Brain Networks
- (2009) William W. Seeley et al. NEURON
- Computational morphometry for detecting changes in brain structure due to development, aging, learning, disease and evolution
- (2009) Daniel Mietchen Frontiers in Neuroinformatics
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started