Mitigating site effects in covariance for machine learning in neuroimaging data

Inter-site harmonization based on dual generative adversarial networks for diffusion tensor imaging: application to neonatal white matter development

(2020) Jie Zhong et al.   Biomedical Engineering Online

Simulating ComBat: how batch correction can lead to the systematic introduction of false positive results in DNA methylation microarray studies

(2020) Tristan Zindler et al.   BMC BIOINFORMATICS

Harmonization of resting-state functional MRI data across multiple imaging sites via the separation of site differences into sampling bias and measurement bias

(2019) Ayumu Yamashita et al.   PLOS BIOLOGY

Longitudinal Mapping of Cortical Thickness Measurements: An Alzheimer’s Disease Neuroimaging Initiative-Based Evaluation Study

(2019) Nicholas J. Tustison et al.   JOURNAL OF ALZHEIMERS DISEASE

A Universal Intensity Standardization Method Based on a Many-to-One Weak-Paired Cycle Generative Adversarial Network for Magnetic Resonance Images

(2019) Yuan Gao et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Identifying Reproducible Individual Differences in Childhood Functional Brain Networks: An ABCD Study

(2019) Scott Marek et al.   Developmental Cognitive Neuroscience

Covariate Assisted Principal regression for covariance matrix outcomes

(2019) Yi Zhao et al.   BIOSTATISTICS

Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan

(2019) Raymond Pomponio et al.   NEUROIMAGE

Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data

(2018) Meichen Yu et al.   HUMAN BRAIN MAPPING

Harmonization of cortical thickness measurements across scanners and sites

(2018) Jean-Philippe Fortin et al.   NEUROIMAGE

Pretreatment and early-treatment cortical thickness is associated with SSRI treatment response in major depressive disorder

(2018) Elizabeth A. Bartlett et al.   NEUROPSYCHOPHARMACOLOGY

Statistical tests and identifiability conditions for pooling and analyzing multisite datasets

(2018) Hao Henry Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predictive modelling using neuroimaging data in the presence of confounds

(2017) Anil Rao et al.   NEUROIMAGE

Harmonization of multi-site diffusion tensor imaging data

(2017) Jean-Philippe Fortin et al.   NEUROIMAGE

Multivariate pattern analysis utilizing structural or functional MRI—In individuals with musculoskeletal pain and healthy controls: A systematic review

(2017) Ashley Smith et al.   SEMINARS IN ARTHRITIS AND RHEUMATISM

Establishing moderators and biosignatures of antidepressant response in clinical care (EMBARC): Rationale and design

(2016) Madhukar H. Trivedi et al.   JOURNAL OF PSYCHIATRIC RESEARCH

Removing inter-subject technical variability in magnetic resonance imaging studies

(2016) Jean-Philippe Fortin et al.   NEUROIMAGE

Correlation and variable importance in random forests

(2016) Baptiste Gregorutti et al.   STATISTICS AND COMPUTING

Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses

(2015) Vegard Nygaard et al.   BIOSTATISTICS

UK Biobank: An Open Access Resource for Identifying the Causes of a Wide Range of Complex Diseases of Middle and Old Age

(2015) Cathie Sudlow et al.   PLOS MEDICINE

Decoding Neural Representational Spaces Using Multivariate Pattern Analysis

(2014) James V. Haxby et al.   Annual Review of Neuroscience

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

An fMRI-Based Neurologic Signature of Physical Pain

(2013) Tor D. Wager et al.   NEW ENGLAND JOURNAL OF MEDICINE

Accelerated Brain Aging in Schizophrenia and Beyond: A Neuroanatomical Marker of Psychiatric Disorders

(2013) N. Koutsouleris et al.   SCHIZOPHRENIA BULLETIN

Effect of scanner in longitudinal studies of brain volume changes

(2011) Hidemasa Takao et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data

(2011) Brian B. Avants et al.   NEUROINFORMATICS

A Covariance Regression Model

(2011) Peter D. Hoff et al.   STATISTICA SINICA

Update on the Magnetic Resonance Imaging core of the Alzheimer's Disease Neuroimaging Initiative

(2010) Clifford R. Jack et al.   Alzheimers & Dementia

N4ITK: Improved N3 Bias Correction

(2010) Nicholas J Tustison et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Adaptive non-local means denoising of MR images with spatially varying noise levels

(2009) José V. Manjón et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Impact of scanner hardware and imaging protocol on image quality and compartment volume precision in the ADNI cohort

(2009) Frithjof Kruggel et al.   NEUROIMAGE

Reliability of MRI-derived cortical and subcortical morphometric measures: Effects of pulse sequence, voxel geometry, and parallel imaging

(2008) J WONDERLICK et al.   NEUROIMAGE

Registration based cortical thickness measurement

(2008) Sandhitsu R. Das et al.   NEUROIMAGE