A resistome survey across hundreds of freshwater bacterial communities reveals the impacts of veterinary and human antibiotics use

Relationship between water quality, heavy metals and antibiotic resistance genes among three freshwater lakes

(2022) Adharsh Rajasekar et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis

(2022) Christopher JL Murray et al.   LANCET

Protist Diversity and Metabolic Strategy in Freshwater Lakes Are Shaped by Trophic State and Watershed Land Use on a Continental Scale

(2022) Rebecca E. Garner et al.   mSystems

Herbicide Selection Promotes Antibiotic Resistance in Soil Microbiomes

(2021) Hanpeng Liao et al.   MOLECULAR BIOLOGY AND EVOLUTION

Agricultural land-use change exacerbates the dissemination of antibiotic resistance genes via surface runoffs in Lake Tai Basin, China

(2021) Ming-Sha Zhang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Unraveling the riverine antibiotic resistome: The downstream fate of anthropogenic inputs

(2021) Jangwoo Lee et al.   WATER RESEARCH

The occurrence of potentially pathogenic fungi and protists in Canadian lakes predicted using geomatics, in situ and satellite-derived variables: Towards a tele-epidemiological approach

(2021) Anaïs Oliva et al.   WATER RESEARCH

The Science of Antibiotic Discovery

(2020) Kim Lewis   CELL

PlasClass improves plasmid sequence classification

(2020) David Pellow et al.   PLoS Computational Biology

Metagenome sequencing to unveil the resistome in a deep subtropical lake on the Yunnan-Guizhou Plateau, China

(2020) Xiong Pan et al.   ENVIRONMENTAL POLLUTION

A large-scale assessment of lakes reveals a pervasive signal of land use on bacterial communities

(2020) S. A. Kraemer et al.   ISME Journal

Distribution of antibiotic resistance genes in an agriculturally disturbed lake in China: Their links with microbial communities, antibiotics, and water quality

(2020) Zhi Wang et al.   JOURNAL OF HAZARDOUS MATERIALS

Prevalence, source and risk of antibiotic resistance genes in the sediments of Lake Tai (China) deciphered by metagenomic assembly: A comparison with other global lakes

(2019) Haiyang Chen et al.   ENVIRONMENT INTERNATIONAL

Antibiotic Pollution in the Environment: From Microbial Ecology to Public Policy

(2019) Susanne A. Kraemer et al.   Microorganisms

Occurrence and distribution of antibiotic resistance genes in the water and sediments of Qingcaosha Reservoir, Shanghai, China

(2019) Zhifeng Huang et al.   Environmental Sciences Europe

The NSERC Canadian Lake Pulse Network: A national assessment of lake health providing science for water management in a changing climate

(2019) Yannick Huot et al.   SCIENCE OF THE TOTAL ENVIRONMENT

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Antibiotics and antibiotic resistance genes in global lakes: A review and meta-analysis

(2018) Yuyi Yang et al.   ENVIRONMENT INTERNATIONAL

Distribution of clinically relevant antibiotic resistance genes in Lake Tai, China

(2018) C. Stange et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Algae-mediated removal of selected pharmaceutical and personal care products (PPCPs) from Lake Mead water

(2017) Xuelian Bai et al.   SCIENCE OF THE TOTAL ENVIRONMENT

ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database

(2016) Ying Yang et al.   BIOINFORMATICS

Metagenomic Analysis Revealing Antibiotic Resistance Genes (ARGs) and Their Genetic Compartments in the Tibetan Environment

(2016) Baowei Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

What happens in hospitals does not stay in hospitals: antibiotic-resistant bacteria in hospital wastewater systems

(2016) D. Hocquet et al.   JOURNAL OF HOSPITAL INFECTION

Appearance of β-lactam Resistance Genes in Agricultural Soils and Clinical Isolates over the 20th Century

(2016) David W. Graham et al.   Scientific Reports

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

(2015) Chandan Pal et al.   BMC GENOMICS

Does human activity impact the natural antibiotic resistance background? Abundance of antibiotic resistance genes in 21 Swiss lakes

(2015) Nadine Czekalski et al.   ENVIRONMENT INTERNATIONAL

Accumulation of Clinically Relevant Antibiotic-Resistance Genes, Bacterial Load, and Metals in Freshwater Lake Sediments in Central Europe

(2015) Naresh Devarajan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Tackling antibiotic resistance: the environmental framework

(2015) Thomas U. Berendonk et al.   NATURE REVIEWS MICROBIOLOGY

Functional Characterization of Bacteria Isolated from Ancient Arctic Soil Exposes Diverse Resistance Mechanisms to Modern Antibiotics

(2015) Gabriel G. Perron et al.   PLoS One

Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment

(2014) Joseph Nesme et al.   CURRENT BIOLOGY

Wastewater as a point source of antibiotic-resistance genes in the sediment of a freshwater lake

(2014) Nadine Czekalski et al.   ISME Journal

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India

(2014) Johan Bengtsson-Palme et al.   Frontiers in Microbiology

Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review

(2013) L. Rizzo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Correlation Between Upstream Human Activities and Riverine Antibiotic Resistance Genes

(2012) Amy Pruden et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Antibiotic Resistance Is Prevalent in an Isolated Cave Microbiome

(2012) Kirandeep Bhullar et al.   PLoS One

Are humans increasing bacterial evolvability?

(2012) Michael R. Gillings et al.   TRENDS IN ECOLOGY & EVOLUTION

ggplot2: Elegant Graphics for Data Analysis by WICKHAM, H.

(2011) Leland Wilkinson   BIOMETRICS

Antibiotic resistant bacteria/genes dissemination in lacustrine sediments highly increased following cultural eutrophication of Lake Geneva (Switzerland)

(2011) Florian Thevenon et al.   CHEMOSPHERE

Lakes as sentinels of climate change

(2011) Rita Adrian et al.   LIMNOLOGY AND OCEANOGRAPHY

Lakes as sentinels and integrators for the effects of climate change on watersheds, airsheds, and landscapes

(2011) D. W. Schindler   LIMNOLOGY AND OCEANOGRAPHY

The Ecology, Biology and Pathogenesis of Acinetobacter spp.: An Overview

(2011) Hamuel James Doughari et al.   MICROBES AND ENVIRONMENTS

Antibiotic resistance is ancient

(2011) Vanessa M. D’Costa et al.   NATURE

Identification of Antibiotic-Resistance-Gene Molecular Signatures Suitable as Tracers of Pristine River, Urban, and Agricultural Sources

(2010) H. Storteboom et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Antibiotic resistance genes in water environment

(2009) Xu-Xiang Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics

(2009) R. Szczepanowski et al.   MICROBIOLOGY-SGM

Effects of Antibiotics on Quorum Sensing in Pseudomonas aeruginosa

(2008) M. E. Skindersoe et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Antibiotics and Antibiotic Resistance Genes in Natural Environments

(2008) J. L. Martinez   SCIENCE