Cross-species transmission of an ancient endogenous retrovirus and convergent co-option of its envelope gene in two mammalian orders

The Dfam community resource of transposable element families, sequence models, and genome annotations

(2021) Jessica Storer et al.   Mobile DNA

Evolutionary history of Carnivora (Mammalia, Laurasiatheria) inferred from mitochondrial genomes

(2021) Alexandre Hassanin et al.   PLoS One

Bioaccumulation of Pathogen Exposure in Top Predators

(2021) Jennifer L. Malmberg et al.   TRENDS IN ECOLOGY & EVOLUTION

RetroCHMP3 blocks budding of enveloped viruses without blocking cytokinesis

(2021) Lara Rheinemann et al.   CELL

ICTV Virus Taxonomy Profile: Retroviridae 2021

(2021) John Coffin et al.   JOURNAL OF GENERAL VIROLOGY

Identification and characterization of ERV-W-like sequences in Platyrrhini species provides new insights into the evolutionary history of ERV-W in primates

(2020) Nicole Grandi et al.   Mobile DNA

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update

(2020) Vahid Jalili et al.   NUCLEIC ACIDS RESEARCH

Infectious KoRV-related retroviruses circulating in Australian bats

(2020) Joshua A. Hayward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API

(2020) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Origins and evolutionary consequences of ancient endogenous retroviruses

(2019) Welkin E. Johnson   NATURE REVIEWS MICROBIOLOGY

Evolution of the rodent Trim5 cluster is marked by divergent paralogous expansions and independent acquisitions of TrimCyp fusions

(2019) Guney Boso et al.   Scientific Reports

Evolutionary Models for the Diversification of Placental Mammals Across the KPg Boundary

(2019) Mark S. Springer et al.   Frontiers in Genetics

Ancient evolutionary origin and positive selection of the retroviral restriction factor Fv1 in muroid rodents

(2018) Guney Boso et al.   JOURNAL OF VIROLOGY

Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes

(2018) Steven Weaver et al.   MOLECULAR BIOLOGY AND EVOLUTION

Endogenous retroviruses of non-avian/mammalian vertebrates illuminate diversity and deep history of retroviruses

(2018) Xiaoyu Xu et al.   PLoS Pathogens

Nomenclature for endogenous retrovirus (ERV) loci

(2018) Robert J. Gifford et al.   Retrovirology

CETARTIODACTYLA: UPDATING A TIME-CALIBRATED MOLECULAR PHYLOGENY

(2018) Juan P. Zurano et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver

(2018) Arun Prasad Pandurangan et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations

(2018) Salvador Daniel Rivas-Carrillo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenomic Resolution of the Phylogeny of Laurasiatherian Mammals: Exploring Phylogenetic Signals within Coding and Noncoding Sequences

(2017) Meng-Yun Chen et al.   Genome Biology and Evolution

Transmission, Evolution, and Endogenization: Lessons Learned from Recent Retroviral Invasions

(2017) Alex D. Greenwood et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

An endogenous retroviral envelope syncytin and its cognate receptor identified in the viviparous placentalMabuyalizard

(2017) Guillaume Cornelis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HEMO, an ancestral endogenous retroviral envelope protein shed in the blood of pregnant women and expressed in pluripotent stem cells and tumors

(2017) Odile Heidmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Co-option of an endogenous retrovirus envelope for host defense in hominid ancestors

(2017) Daniel Blanco-Melo et al.   eLife

The life history of retrocopies illuminates the evolution of new mammalian genes

(2016) Francesco Nicola Carelli et al.   GENOME RESEARCH

Transspecies Transmission of Gammaretroviruses and the Origin of the Gibbon Ape Leukaemia Virus (GaLV) and the Koala Retrovirus (KoRV)

(2016) Joachim Denner   Viruses-Basel

Tracking interspecies transmission and long-term evolution of an ancient retrovirus using the genomes of modern mammals

(2016) William E Diehl et al.   eLife

Endogenous Retroviruses in Fish Genomes: From Relics of Past Infections to Evolutionary Innovations?

(2016) Magali Naville et al.   Frontiers in Microbiology

Roles for retrotransposon insertions in human disease

(2016) Dustin C. Hancks et al.   Mobile DNA

Resolving the relationships of Paleocene placental mammals

(2015) Thomas J. D. Halliday et al.   BIOLOGICAL REVIEWS

A Genome-Wide Landscape of Retrocopies in Primate Genomes

(2015) Fábio C.P. Navarro et al.   Genome Biology and Evolution

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

JPred4: a protein secondary structure prediction server

(2015) Alexey Drozdetskiy et al.   NUCLEIC ACIDS RESEARCH

Retroviral envelope gene captures andsyncytinexaptation for placentation in marsupials

(2015) Guillaume Cornelis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cross-Species Transmission and Differential Fate of an Endogenous Retrovirus in Three Mammal Lineages

(2015) Xiaoyu Zhuo et al.   PLoS Pathogens

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Capture of syncytin-Mar1, a Fusogenic Endogenous Retroviral Envelope Gene Involved in Placentation in the Rodentia Squirrel-Related Clade

(2014) François Redelsperger et al.   JOURNAL OF VIROLOGY

Independent Birth of a Novel TRIMCyp in Tupaia belangeri with a Divergent Function from Its Paralog TRIM5

(2014) Dan Mu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Right Place, Wrong Species: A 20-Year Review of Rabies Virus Cross Species Transmission among Terrestrial Mammals in the United States

(2014) Ryan M. Wallace et al.   PLoS One

Retroviral envelope syncytin capture in an ancestrally diverged mammalian clade for placentation in the primitive Afrotherian tenrecs

(2014) G. Cornelis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Origins of the Endogenous and Infectious Laboratory Mouse Gammaretroviruses

(2014) Christine Kozak   Viruses-Basel

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

RCPedia: a database of retrocopied genes

(2013) Fábio C. P. Navarro et al.   BIOINFORMATICS

Refrex-1, a Soluble Restriction Factor against Feline Endogenous and Exogenous Retroviruses

(2013) J. Ito et al.   JOURNAL OF VIROLOGY

Pushing the endogenous envelope

(2013) J. E. Henzy et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation

(2013) C. Lavialle et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Captured retroviral envelope syncytin gene associated with the unique placental structure of higher ruminants

(2013) Guillaume Cornelis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Birth, decay, and reconstruction of an ancient TRIMCyp gene fusion in primate genomes

(2013) R. Malfavon-Borja et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Broad-scale phylogenomics provides insights into retrovirus-host evolution

(2013) A. Hayward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel human endogenous retroviral protein inhibits cell-cell fusion

(2013) Jun Sugimoto et al.   Scientific Reports

Origins of HIV and the AIDS Pandemic

(2013) P. M. Sharp et al.   Cold Spring Harbor Perspectives in Medicine

Endogenous retroviruses: acquisition, amplification and taming of genome invaders

(2013) Marie Dewannieux et al.   Current Opinion in Virology

The Extraordinary Evolutionary History of the Reticuloendotheliosis Viruses

(2013) Anna Maria Niewiadomska et al.   PLOS BIOLOGY

Differential Evolutionary Fate of an Ancestral Primate Endogenous Retrovirus Envelope Gene, the EnvV Syncytin, Captured for a Function in Placentation

(2013) Cécile Esnault et al.   PLoS Genetics

Cross-species transmission of simian retroviruses

(2012) Sabrina Locatelli et al.   AIDS

The inner ear ofDiacodexis, the oldest artiodactyl mammal

(2012) M. J. Orliac et al.   JOURNAL OF ANATOMY

Ancestral capture of syncytin-Car1, a fusogenic endogenous retroviral envelope gene involved in placentation and conserved in Carnivora

(2012) G. Cornelis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Change of Positive Selection Pressure on HIV-1 Envelope Gene Inferred by Early and Recent Samples

(2011) Izumi Yoshida et al.   PLoS One

A pair of co-opted retroviral envelope syncytin genes is required for formation of the two-layered murine placental syncytiotrophoblast

(2011) A. Dupressoir et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two-stepping through time: mammals and viruses

(2011) Nicholas R. Meyerson et al.   TRENDS IN MICROBIOLOGY

The Chicxulub Asteroid Impact and Mass Extinction at the Cretaceous-Paleogene Boundary

(2010) P. Schulte et al.   SCIENCE

Extensive survey on the prevalence and genetic diversity of SIVs in primate bushmeat provides insights into risks for potential new cross-species transmissions

(2009) Avelin F. Aghokeng et al.   INFECTION GENETICS AND EVOLUTION

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

(2009) Gavin J. D. Smith et al.   NATURE

Burst of Young Retrogenes and Independent Retrogene Formation in Mammals

(2009) Deng Pan et al.   PLoS One

Identification of an endogenous retroviral envelope gene with fusogenic activity and placenta-specific expression in the rabbit: a new "syncytin" in a third order of mammals

(2009) Odile Heidmann et al.   Retrovirology

Gene conversion and purifying selection of a placenta-specific ERV-V envelope gene during simian evolution

(2008) Anders L Kjeldbjerg et al.   BMC EVOLUTIONARY BIOLOGY

Mitogenomic relationships of placental mammals and molecular estimates of their divergences

(2008) Ulfur Arnason et al.   GENE

An infectious progenitor for the murine IAP retrotransposon: Emergence of an intracellular genetic parasite from an ancient retrovirus

(2008) D. Ribet et al.   GENOME RESEARCH

Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases

(2008) C. R. Parrish et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Independent evolution of an antiviral TRIMCyp in rhesus macaques

(2008) S. J. Wilson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA