iPiDA-GCN: Identification of piRNA-disease associations based on Graph Convolutional Network

HPOFiller: identifying missing protein–phenotype associations by graph convolutional network

(2021) Lizhi Liu et al.   BIOINFORMATICS

iCircDA-LTR: identification of circRNA-disease associations based on Learning to Rank

(2021) Hang Wei et al.   BIOINFORMATICS

Emerging functions of piwi‐interacting RNAs in diseases

(2021) Kai Wang et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

A Novel Method to Predict Drug-Target Interactions Based on Large-Scale Graph Representation Learning

(2021) Bo-Wei Zhao et al.   Cancers

piRBase: integrating piRNA annotation in all aspects

(2021) Jiajia Wang et al.   NUCLEIC ACIDS RESEARCH

ncRPheno: a comprehensive database platform for identification and validation of disease related noncoding RNAs

(2020) Wenliang Zhang et al.   RNA Biology

Identifying drug–target interactions based on graph convolutional network and deep neural network

(2020) Tianyi Zhao et al.   BRIEFINGS IN BIOINFORMATICS

iPiDi-PUL: identifying Piwi-interacting RNA-disease associations based on positive unlabeled learning

(2020) Hang Wei et al.   BRIEFINGS IN BIOINFORMATICS

iPiDA-sHN: Identification of Piwi-interacting RNA-disease associations by selecting high quality negative samples

(2020) Hang Wei et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

MNDR v3.0: mammal ncRNA–disease repository with increased coverage and annotation

(2020) Lin Ning et al.   NUCLEIC ACIDS RESEARCH

An insight into the roles of piRNAs and PIWI proteins in the diagnosis and pathogenesis of oral, esophageal, and gastric cancer

(2020) Jamal Halajzadeh et al.   PATHOLOGY RESEARCH AND PRACTICE

Predicting MiRNA-Disease Association by Latent Feature Extraction with Positive Samples

(2019) Kai Che et al.   Genes

Ensemble of decision tree reveals potential miRNA-disease associations

(2019) Xing Chen et al.   PLoS Computational Biology

Neural inductive matrix completion with graph convolutional networks for miRNA-disease association prediction

(2019) Jin Li et al.   BIOINFORMATICS

Prediction of lncRNA–disease associations based on inductive matrix completion

(2018) Chengqian Lu et al.   BIOINFORMATICS

Cancerin: A computational pipeline to infer cancer-associated ceRNA interaction networks

(2018) Duc Do et al.   PLoS Computational Biology

Sporadic Parkinson’s disease derived neuronal cells show disease-specific mRNA and small RNA signatures with abundant deregulation of piRNAs

(2018) Markus Schulze et al.   Acta Neuropathologica Communications

piRNA-Guided Genome Defense: From Biogenesis to Silencing

(2018) Benjamin Czech et al.   Annual Review of Genetics

Geometric Deep Learning: Going beyond Euclidean data

(2017) Michael M. Bronstein et al.   IEEE SIGNAL PROCESSING MAGAZINE

Small RNA sequencing revealed dysregulated piRNAs in Alzheimer's disease and their probable role in pathogenesis

(2017) Jyoti Roy et al.   Molecular BioSystems

piRNA-mediated regulation of transposon alternative splicing in the soma and germ line

(2017) Felipe Karam Teixeira et al.   NATURE

PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction

(2017) Zhu-Hong You et al.   PLoS Computational Biology

PIWI-interacting RNA (piRNA) signatures in human cardiac progenitor cells

(2016) Serena Vella et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

IRWRLDA: improved random walk with restart for lncRNA-disease association prediction

(2016) Xing Chen et al.   Oncotarget

Piwi-interacting RNAs as novel prognostic markers in clear cell renal cell carcinomas

(2015) Jonas Busch et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis

(2014) Guangchuang Yu et al.   BIOINFORMATICS

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

(2014) Warren A. Kibbe et al.   NUCLEIC ACIDS RESEARCH

Disease Ontology: a backbone for disease semantic integration

(2011) L. M. Schriml et al.   NUCLEIC ACIDS RESEARCH

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

Protein–Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks

(2010) Javier De Las Rivas et al.   PLoS Computational Biology