Principal Component Analyses (PCA)-based findings in population genetic studies are highly biased and must be reevaluated

Population genetic considerations for using biobanks as international resources in the pandemic era and beyond

(2021) Hannah Carress et al.   BMC GENOMICS

Learning from reproducing computational results: introducing three principles and the Reproduction Package

(2021) M. S. Krafczyk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

On the Unfounded Enthusiasm for Soft Selective Sweeps III: The Supervised Machine Learning Algorithm That Isn’t

(2021) Eran Elhaik et al.   Genes

High-resolution inference of genetic relationships among Jewish populations

(2020) Naama M. Kopelman et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Robust genome-wide ancestry inference for heterogeneous datasets: illustrated using the 1,000 genome project with 3D facial images

(2020) Jiarui Li et al.   Scientific Reports

Factor analysis of ancient population genomic samples

(2020) Olivier François et al.   Nature Communications

The genomic history of the Iberian Peninsula over the past 8000 years

(2019) Iñigo Olalde et al.   SCIENCE

Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population

(2019) Ken Suzuki et al.   NATURE GENETICS

Substructured Population Growth in the Ashkenazi Jews Inferred with Approximate Bayesian Computation

(2019) Ariella L Gladstein et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence of Assortative Mating in Autism Spectrum Disorder

(2019) Siobhan Connolly et al.   BIOLOGICAL PSYCHIATRY

Be careful with your principal components

(2019) Mats Björklund   EVOLUTION

Large-scale GWAS reveals insights into the genetic architecture of same-sex sexual behavior

(2019) Andrea Ganna et al.   SCIENCE

A Prospective Analysis of Genetic Variants Associated with Human Lifespan

(2019) Kevin M. Wright et al.   G3-Genes Genomes Genetics

Genome-wide Association Studies in Ancestrally Diverse Populations: Opportunities, Methods, Pitfalls, and Recommendations

(2019) Roseann E. Peterson et al.   CELL

Genetics lab accused of misusing African DNA

(2019) Erik Stokstad   SCIENCE

Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection

(2018) Antonio F. Pardiñas et al.   NATURE GENETICS

Genetic structure, divergence and admixture of Han Chinese, Japanese and Korean populations

(2018) Yuchen Wang et al.   HEREDITAS

A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

(2018) Daniel J. Lawson et al.   Nature Communications

Pair Matcher (PaM): fast model-based optimisation of treatment/case-control matches

(2018) Eran Elhaik et al.   BIOINFORMATICS

The UK Biobank resource with deep phenotyping and genomic data

(2018) Clare Bycroft et al.   NATURE

Differences in genomic abnormalities among African individuals with monoclonal gammopathies using calculated ancestry

(2018) Linda B. Baughn et al.   Blood Cancer Journal

Ancient Ancestry Informative Markers for Identifying Fine-Scale Ancient Population Structure in Eurasians

(2018) Umberto Esposito et al.   Genes

Benchmarking Relatedness Inference Methods with Genome-Wide Data from Thousands of Relatives

(2017) Monica D. Ramstetter et al.   GENETICS

Differences in the rare variant spectrum among human populations

(2017) Iain Mathieson et al.   PLoS Genetics

Benchmarking Relatedness Inference Methods with Genome-Wide Data from Thousands of Relatives

(2017) Monica D. Ramstetter et al.   GENETICS

Editorial: Population Genetics of Worldwide Jewish People

(2017) Eran Elhaik   Frontiers in Genetics

A GWAS in uveal melanoma identifies risk polymorphisms in the CLPTM1L locus

(2017) Lenha Mobuchon et al.   npj Genomic Medicine

Fast Principal-Component Analysis Reveals Convergent Evolution of ADH1B in Europe and East Asia

(2016) Kevin J. Galinsky et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Across-cohort QC analyses of GWAS summary statistics from complex traits

(2016) Guo-Bo Chen et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Localizing Ashkenazic Jews to Primeval Villages in the Ancient Iranian Lands of Ashkenaz

(2016) Ranajit Das et al.   Genome Biology and Evolution

Genomic insights into the origin of farming in the ancient Near East

(2016) Iosif Lazaridis et al.   NATURE

1,500 scientists lift the lid on reproducibility

(2016) Monya Baker   NATURE

FKBP5 polymorphisms, childhood abuse, and PTSD symptoms: Results from the National Health and Resilience in Veterans Study

(2016) Laura E. Watkins et al.   PSYCHONEUROENDOCRINOLOGY

Reconstructing Druze population history

(2016) Scarlett Marshall et al.   Scientific Reports

In Search of the jüdische Typus: A Proposed Benchmark to Test the Genetic Basis of Jewishness Challenges Notions of “Jewish Biomarkers”

(2016) Eran Elhaik   Frontiers in Genetics

Improved Ancestry Estimation for both Genotyping and Sequencing Data using Projection Procrustes Analysis and Genotype Imputation

(2015) Chaolong Wang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data

(2015) Nicolas Duforet-Frebourg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Who has your DNA--or wants it

(2015) J. Kaiser   SCIENCE

Quantitating and Dating Recent Gene Flow between European and East Asian Populations

(2015) Pengfei Qin et al.   Scientific Reports

Geographic population structure analysis of worldwide human populations infers their biogeographical origins

(2014) Eran Elhaik et al.   Nature Communications

Genome flux and stasis in a five millennium transect of European prehistory

(2014) Cristina Gamba et al.   Nature Communications

Genome-wide analysis of the role of copy-number variation in pancreatic cancer risk

(2014) Jason A. Willis et al.   Frontiers in Genetics

RFMix: A Discriminative Modeling Approach for Rapid and Robust Local-Ancestry Inference

(2013) Brian K. Maples et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Reconstructing Roma History from Genome-Wide Data

(2013) Priya Moorjani et al.   PLoS One

Genome-wide data substantiate Holocene gene flow from India to Australia

(2013) I. Pugach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ethiopian Genetic Diversity Reveals Linguistic Stratification and Complex Influences on the Ethiopian Gene Pool

(2012) Luca Pagani et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A model-based approach for analysis of spatial structure in genetic data

(2012) Wen-Yun Yang et al.   NATURE GENETICS

Empirical Distributions of FST from Large-Scale Human Polymorphism Data

(2012) Eran Elhaik   PLoS One

North African Jewish and non-Jewish populations form distinctive, orthogonal clusters

(2012) C. L. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe

(2012) P. Skoglund et al.   SCIENCE

A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes

(2012) D. G. MacArthur et al.   SCIENCE

The genetic prehistory of southern Africa

(2012) Joseph K. Pickrell et al.   Nature Communications

The History of African Gene Flow into Southern Europeans, Levantines, and Jews

(2011) Priya Moorjani et al.   PLoS Genetics

Abraham's Children in the Genome Era: Major Jewish Diaspora Populations Comprise Distinct Genetic Clusters with Shared Middle Eastern Ancestry

(2010) Gil Atzmon et al.   AMERICAN JOURNAL OF HUMAN GENETICS

'Genome order index' should not be used for defining compositional constraints in nucleotide sequences - a case study of the Z-curve

(2010) Eran Elhaik et al.   Biology Direct

Clustering by genetic ancestry using genome-wide SNP data

(2010) Nadia Solovieff et al.   BMC GENETICS

Interview with Luigi Luca Cavalli-Sforza: Past Research and Directions for Future Investigations in Human Population Genetics

(2010) Franz Manni   HUMAN BIOLOGY

Quantification of Population Structure Using Correlated SNPs by Shrinkage Principal Components

(2010) Fei Zou et al.   HUMAN HEREDITY

Morphometrics and phylogenetics: Principal components of shape from cranial modules are neither appropriate nor effective cladistic characters

(2010) D.C. Adams et al.   JOURNAL OF HUMAN EVOLUTION

A risk allele for focal segmental glomerulosclerosis in African Americans is located within a region containing APOL1 and MYH9

(2010) Giulio Genovese et al.   KIDNEY INTERNATIONAL

Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture

(2010) O. Francois et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome-wide structure of the Jewish people

(2010) Doron M. Behar et al.   NATURE

Integrating common and rare genetic variation in diverse human populations

(2010)   NATURE

Genetic history of an archaic hominin group from Denisova Cave in Siberia

(2010) David Reich et al.   NATURE

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Signatures of founder effects, admixture, and selection in the Ashkenazi Jewish population

(2010) S. M. Bray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide Insights into the Patterns and Determinants of Fine-Scale Population Structure in Humans

(2009) Shameek Biswas et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genetic structure of a unique admixed population: implications for medical research

(2009) Nick Patterson et al.   HUMAN MOLECULAR GENETICS

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(2009) Chao Tian et al.   MOLECULAR MEDICINE

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Analysis of genomic diversity in Mexican Mestizo populations to develop genomic medicine in Mexico

(2009) I. Silva-Zolezzi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Illusive Gold Standard in Genetic Ancestry Testing

(2009) Sandra Soo-Jin Lee et al.   SCIENCE

A Genealogical Interpretation of Principal Components Analysis

(2009) Gil McVean   PLoS Genetics

A genome-wide genetic signature of Jewish ancestry perfectly separates individuals with and without full Jewish ancestry in a large random sample of European Americans

(2009) Anna C Need et al.   GENOME BIOLOGY

On the Use of General Control Samples for Genome-wide Association Studies: Genetic Matching Highlights Causal Variants

(2008) Diana Luca et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genes mirror geography within Europe

(2008) John Novembre et al.   NATURE

Principal component analysis of genetic data

(2008) David Reich et al.   NATURE GENETICS

Interpreting principal component analyses of spatial population genetic variation

(2008) John Novembre et al.   NATURE GENETICS

Discerning the Ancestry of European Americans in Genetic Association Studies

(2008) Alkes L. Price et al.   PLoS Genetics

Analysis and Application of European Genetic Substructure Using 300 K SNP Information

(2008) Chao Tian et al.   PLoS Genetics

The Druze: A Population Genetic Refugium of the Near East

(2008) Liran I. Shlush et al.   PLoS One

Analysis of East Asia Genetic Substructure Using Genome-Wide SNP Arrays

(2008) Chao Tian et al.   PLoS One

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE