Regulatory Interplay between RNase III and Antisense RNAs in E. coli: the Case of AsflhD and FlhD, Component of the Master Regulator of Motility

The world of asRNAs in Gram-negative and Gram-positive bacteria

(2020) Maxence Lejars et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

A novel cis antisense RNA AsfD promotes Salmonella enterica serovar Typhi motility and biofilm formation

(2020) Long Chen et al.   MICROBIAL PATHOGENESIS

Tombusvirus p19 Captures RNase III-Cleaved Double-Stranded RNAs Formed by Overlapping Sense and Antisense Transcripts in Escherichia coli

(2020) Linfeng Huang et al.   mBio

Function, Evolution, and Composition of the RpoS Regulon in Escherichia coli

(2020) Herb E. Schellhorn   Frontiers in Microbiology

Physiological roles of antisense RNAs in prokaryotes

(2019) Maxence Lejars et al.   BIOCHIMIE

Discovery of new type I toxin–antitoxin systems adjacent to CRISPR arrays in Clostridium difficile

(2018) Anna Maikova et al.   NUCLEIC ACIDS RESEARCH

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12

(2018) Alberto Santos-Zavaleta et al.   NUCLEIC ACIDS RESEARCH

A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome

(2016) Laurence Ettwiller et al.   BMC GENOMICS

Potential Swimming Motility Variation by AcrR in Escherichia coli

(2016) Ye Jin Kim et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Landscape of RNA polyadenylation inE. coli

(2016) Alexandre Maes et al.   NUCLEIC ACIDS RESEARCH

Transcription Factors Exhibit Differential Conservation in Bacteria with Reduced Genomes

(2016) Edgardo Galán-Vásquez et al.   PLoS One

The small RNA SraG participates in PNPase homeostasis

(2016) Fanette Fontaine et al.   RNA

RNA circularization strategies in vivo and in vitro

(2015) Sonja Petkovic et al.   NUCLEIC ACIDS RESEARCH

Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli

(2014) Maureen K. Thomason et al.   JOURNAL OF BACTERIOLOGY

Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

(2014) Joseph T. Wade et al.   NATURE REVIEWS MICROBIOLOGY

CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains

(2014) Patrick R. Wright et al.   NUCLEIC ACIDS RESEARCH

TargetRNA2: identifying targets of small regulatory RNAs in bacteria

(2014) Mary Beth Kery et al.   NUCLEIC ACIDS RESEARCH

The double-stranded transcriptome of Escherichia coli

(2014) M. Lybecker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unprecedented High-Resolution View of Bacterial Operon Architecture Revealed by RNA Sequencing

(2014) T. Conway et al.   mBio

Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network

(2014) Devon M. Fitzgerald et al.   PLoS Genetics

Bacterial Mg2+Homeostasis, Transport, and Virulence

(2013) Eduardo A. Groisman et al.   Annual Review of Genetics

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

(2013) Carsten Kröger et al.   Cell Host & Microbe

CsrA activatesflhDCexpression by protectingflhDCmRNA from RNase E-mediated cleavage

(2013) Alexander V. Yakhnin et al.   MOLECULAR MICROBIOLOGY

Post-Transcriptional Control of the Escherichia coli PhoQ-PhoP Two-Component System by Multiple sRNAs Involves a Novel Pairing Region of GcvB

(2013) Audrey Coornaert et al.   PLoS Genetics

Role of polyadenylation in regulation of the flagella cascade and motility in Escherichia coli

(2012) Alexandre Maes et al.   BIOCHIMIE

Rho and NusG suppress pervasive antisense transcription in Escherichia coli

(2012) J. M. Peters et al.   GENES & DEVELOPMENT

A complex network of small non-coding RNAs regulate motility inEscherichia coli

(2012) Nicholas De Lay et al.   MOLECULAR MICROBIOLOGY

A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli

(2012) Maureen K. Thomason et al.   MOLECULAR MICROBIOLOGY

Deep Sequencing Reveals Complex Spurious Transcription from Transiently Transfected Plasmids

(2012) Jana Nejepinska et al.   PLoS One

Antisense Transcription Is Pervasive but Rarely Conserved in Enteric Bacteria

(2012) R. Raghavan et al.   mBio

Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli

(2011) Atsuko Shinhara et al.   BMC GENOMICS

A systems biology approach sheds new light on Escherichia coli acid resistance

(2011) Anna Stincone et al.   NUCLEIC ACIDS RESEARCH

Convergent transcription confers a bistable switch in Enterococcus faecalis conjugation

(2011) A. Chatterjee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNase III Participates in GadY-Dependent Cleavage of the gadX-gadW mRNA

(2010) Jason A. Opdyke et al.   JOURNAL OF MOLECULAR BIOLOGY

A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri

(2010) Mara Giangrossi et al.   NUCLEIC ACIDS RESEARCH

Widespread Antisense Transcription in Escherichia coli

(2010) J. E. Dornenburg et al.   mBio

Dissection of recognition determinants ofEscherichia coliσ32suggests a composite −10 region with an ‘extended −10’ motif and a core −10 element

(2009) Byoung-Mo Koo et al.   MOLECULAR MICROBIOLOGY

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

(2009) Alfredo Mendoza-Vargas et al.   PLoS One

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum

(2008) Gaëlle André et al.   NUCLEIC ACIDS RESEARCH