Genomic Sequencing and Phylogenomics of Cowpox Virus

An Update of Orthopoxvirus Molecular Evolution

(2022) Igor V. Babkin et al.   Viruses-Basel

Genomic Sequencing and Analysis of a Novel Human Cowpox Virus With Mosaic Sequences From North America and Old World Orthopoxvirus

(2022) Diana Diaz-Cánova et al.   Frontiers in Microbiology

The Disease Ecology, Epidemiology, Clinical Manifestations, Management, Prevention, and Control of Increasing Human Infections with Animal Orthopoxviruses

(2021) James H. Diaz   WILDERNESS & ENVIRONMENTAL MEDICINE

Comparative Pathogenesis, Genomics and Phylogeography of Mousepox

(2021) Carla Mavian et al.   Viruses-Basel

Ancient Gene Capture and Recent Gene Loss Shape the Evolution of Orthopoxvirus-Host Interaction Genes

(2021) Tatiana G. Senkevich et al.   mBio

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Here, There, and Everywhere: The Wide Host Range and Geographic Distribution of Zoonotic Orthopoxviruses

(2020) Natalia Ingrid Oliveira Silva et al.   Viruses-Basel

Use of Next Generation Sequencing to study two cowpox virus outbreaks

(2019) Markus H. Antwerpen et al.   PeerJ

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

(2019) Diego Darriba et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular Detection and Characterization of the First Cowpox Virus Isolate Derived from a Bank Vole

(2019) Kathrin Jeske et al.   Viruses-Basel

Bayesian reconstruction of the evolutionary history and cross-species transition of variola virus and orthopoxviruses

(2018) Gianguglielmo Zehender et al.   JOURNAL OF MEDICAL VIROLOGY

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Genome Sequences of Akhmeta Virus, an Early Divergent Old World Orthopoxvirus

(2018) Jinxin Gao et al.   Viruses-Basel

Understanding orthopoxvirus host range and evolution: from the enigmatic to the usual suspects

(2018) Mary G Reynolds et al.   Current Opinion in Virology

Cowpox Virus Infection in Pet Rat Owners—Not Always Immediately Recognized: In reply

(2018) Christian Becker   Deutsches Arzteblatt International

Two novel poxviruses with unusual genome rearrangements: NY_014 and Murmansk

(2017) Chad Smithson et al.   VIRUS GENES

Cowpox virus: What’s in a Name?

(2017) Matthew Mauldin et al.   Viruses-Basel

Epidemiological Investigations of Four Cowpox Virus Outbreaks in Alpaca Herds, Germany

(2017) Almut Prkno et al.   Viruses-Basel

Classification of Cowpox Viruses into Several Distinct Clades and Identification of a Novel Lineage

(2017) Annika Franke et al.   Viruses-Basel

Cowpox in a human, Russia, 2015

(2016) A. Y. POPOVA et al.   EPIDEMIOLOGY AND INFECTION

The genomes of three North American orthopoxviruses

(2016) Chad Smithson et al.   VIRUS GENES

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Human Infection with a Zoonotic Orthopoxvirus in the Country of Georgia

(2015) Neil M. Vora et al.   NEW ENGLAND JOURNAL OF MEDICINE

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Evolution of and Evolutionary Relationships between Extant Vaccinia Virus Strains

(2014) Li Qin et al.   JOURNAL OF VIROLOGY

Prediction of Steps in the Evolution of Variola Virus Host Range

(2014) Chad Smithson et al.   PLoS One

Molecular characterization and phylogenetics of Fennoscandian cowpox virus isolates based on the p4c and atip genes

(2014) Malachy Okeke et al.   Virology Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-Wide Comparison of Cowpox Viruses Reveals a New Clade Related to Variola Virus

(2013) Piotr Wojtek Dabrowski et al.   PLoS One

A retrospective study of the orthopoxvirus molecular evolution

(2012) Igor V. Babkin et al.   INFECTION GENETICS AND EVOLUTION

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A naturally occurring cowpox virus with an ectromelia virus A-type inclusion protein gene displays atypical A-type inclusions

(2011) Malachy Ifeanyi Okeke et al.   INFECTION GENETICS AND EVOLUTION

Molecular Dating in the Evolution of Vertebrate Poxviruses

(2011) Igor V. Babkin et al.   INTERVIROLOGY

Genomic Analysis of the Vaccinia Virus Strain Variants Found in Dryvax Vaccine

(2011) L. Qin et al.   JOURNAL OF VIROLOGY

Chasing Jenner's Vaccine: Revisiting Cowpox Virus Classification

(2011) Darin S. Carroll et al.   PLoS One

Orthopox Virus Infections in Eurasian Wild Rodents

(2011) Paula M. Kinnunen et al.   VECTOR-BORNE AND ZOONOTIC DISEASES

Fatal cowpox virus infection in two squirrel monkeys (Saimiri sciureus)

(2011) S. J. Girling et al.   VETERINARY RECORD

Characterization of indels in poxvirus genomes

(2010) Danielle Coulson et al.   VIRUS GENES

Orthopoxvirus Genome Evolution: The Role of Gene Loss

(2010) Robert Curtis Hendrickson et al.   Viruses-Basel

Comparison and phylogenetic analysis of cowpox viruses isolated from cats and humans in Fennoscandia

(2009) Hilde Hansen et al.   ARCHIVES OF VIROLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Cowpox virus infection: an emerging health threat

(2009) Rengina M Vorou et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Molecular evolution of poxviruses

(2008) I. V. Babkin et al.   RUSSIAN JOURNAL OF GENETICS

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY