Bacterial community response to environmental change varies with depth in the surface soil

Habitat heterogeneity induced by pyrogenic organic matter in wildfire-perturbed soils mediates bacterial community assembly processes

(2021) Lujun Zhang et al.   ISME Journal

Effects of Climate Change on Natural-Caused Fire Activity in Western U.S. National Forests

(2021) Hadi Heidari et al.   Atmosphere

Decomposition and transformations along the continuum from litter to soil organic matter in forest soils

(2021) Cindy E. Prescott et al.   FOREST ECOLOGY AND MANAGEMENT

Drought and plant litter chemistry alter microbial gene expression and metabolite production

(2020) Ashish A. Malik et al.   ISME Journal

Volatile organic compounds from leaf litter decomposition alter soil microbial communities and carbon dynamics

(2020) Steven G McBride et al.   ECOLOGY

Wildfire effects on diversity and composition in soil bacterial communities

(2020) Luis E. Sáenz de Miera et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Quantitative assessment of microbial necromass contribution to soil organic matter

(2019) Chao Liang et al.   GLOBAL CHANGE BIOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Fire affects the taxonomic and functional composition of soil microbial communities, with cascading effects on grassland ecosystem functioning

(2019) Sihang Yang et al.   GLOBAL CHANGE BIOLOGY

Soil microbiomes and climate change

(2019) Janet K. Jansson et al.   NATURE REVIEWS MICROBIOLOGY

Soil bacterial and fungal response to wildfires in the Canadian boreal forest across a burn severity gradient

(2019) Thea Whitman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Short communication: Surface charring from prescribed burning has minimal effects on soil bacterial community composition two weeks post-fire in jack pine barrens

(2019) Christina Kranz et al.   APPLIED SOIL ECOLOGY

Depth matters: effects of precipitation regime on soil microbial activity upon rewetting of a plant-soil system

(2018) Ilonka C. Engelhardt et al.   ISME Journal

Bacterial diversity is positively correlated with soil heterogeneity

(2018) Emily E. Curd et al.   Ecosphere

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Life in Dry Soils: Effects of Drought on Soil Microbial Communities and Processes

(2018) Joshua P. Schimel   Annual Review of Ecology Evolution and Systematics

Belowground community responses to fire: meta-analysis reveals contrasting responses of soil microorganisms and mesofauna

(2018) Yamina Pressler et al.   OIKOS

Decomposition responses to climate depend on microbial community composition

(2018) Sydney I. Glassman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

It is elemental: soil nutrient stoichiometry drives bacterial diversity

(2017) Manuel Delgado-Baquerizo et al.   ENVIRONMENTAL MICROBIOLOGY

Dispersal alters bacterial diversity and composition in a natural community

(2017) Michaeline B N Albright et al.   ISME Journal

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

(2017) Sigrid Dassen et al.   MOLECULAR ECOLOGY

Soil depth and crop determinants of bacterial communities under ten biofuel cropping systems

(2017) Bangzhou Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Interactive effects of precipitation manipulation and nitrogen addition on soil properties in California grassland and shrubland

(2016) Banafshe Khalili et al.   APPLIED SOIL ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Temporal variation overshadows the response of leaf litter microbial communities to simulated global change

(2015) Kristin L Matulich et al.   ISME Journal

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term forest soil warming alters microbial communities in temperate forest soils

(2015) Kristen M. DeAngelis et al.   Frontiers in Microbiology

Unprecedented 21st century drought risk in the American Southwest and Central Plains

(2015) B. I. Cook et al.   Science Advances

Altered water and nitrogen input shifts succession in a southern California coastal sage community

(2014) Sarah Kimball et al.   ECOLOGICAL APPLICATIONS

Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest

(2014) Neslihan Taş et al.   ISME Journal

Changes in extracellular enzyme activity and microbial community structure with soil depth at the Luquillo Critical Zone Observatory

(2014) M.M. Stone et al.   SOIL BIOLOGY & BIOCHEMISTRY

Litter Input Controls on Soil Carbon in a Temperate Deciduous Forest

(2014) Richard D. Bowden et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Going underground: root traits as drivers of ecosystem processes

(2014) Richard D. Bardgett et al.   TRENDS IN ECOLOGY & EVOLUTION

Soil organic matter dynamics: a biological perspective derived from the use of compound-specific isotopes studies

(2013) Gerd Gleixner   ECOLOGICAL RESEARCH

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Leaf Litter Mixtures Alter Microbial Community Development: Mechanisms for Non-Additive Effects in Litter Decomposition

(2013) Samantha K. Chapman et al.   PLoS One

Temporal variation in surface and subsoil abundance and function of the soil microbial community in an arable soil

(2013) Susanne Kramer et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of rainfall intensity, underlying surface and slope gradient on soil infiltration under simulated rainfall experiments

(2012) Jun Huang et al.   CATENA

Microbial abundance and composition influence litter decomposition response to environmental change

(2012) Steven D. Allison et al.   ECOLOGY

Microbial communities and their responses to simulated global change fluctuate greatly over multiple years

(2012) Jessica L. M. Gutknecht et al.   GLOBAL CHANGE BIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Ecological effects of experimental drought and prescribed fire in a southern California coastal grassland

(2012) D.L. Potts et al.   JOURNAL OF ARID ENVIRONMENTS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

Effects of rainfall on soil moisture and water movement in a subalpine dark coniferous forest in southwestern China

(2011) Qing Xu et al.   HYDROLOGICAL PROCESSES

Leaf litter manipulations alter soil physicochemical properties and tree growth in a Neotropical savanna

(2011) Randol Villalobos-Vega et al.   PLANT AND SOIL

Seasonal dynamics of the bacterial community in forest soils under different quantities of leaf litter

(2010) Nicolas Chemidlin Prevost-Boure et al.   APPLIED SOIL ECOLOGY

Plant diversity effects on soil microorganisms support the singular hypothesis

(2010) N. Eisenhauer et al.   ECOLOGY

Soil priming by sugar and leaf-litter substrates: A link to microbial groups

(2009) Andrew T. Nottingham et al.   APPLIED SOIL ECOLOGY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

FT-IR study of the changes in carbohydrate chemistry of three New Jersey pine barrens leaf litters during simulated control burning

(2008) Kristin Lammers et al.   SOIL BIOLOGY & BIOCHEMISTRY