Bioenergy sorghum stem growth regulation: intercalary meristem localization, development, and gene regulatory network analysis

TMK-based cell-surface auxin signalling activates cell-wall acidification

(2021) Wenwei Lin et al.   NATURE

Empirical Evidence for the Potential Climate Benefits of Decarbonizing Light Vehicle Transport in the U.S. with Bioenergy from Purpose-Grown Biomass with and without BECCS

(2020) Ilya Gelfand et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Class I TCP transcription factors activate the SAUR63 gene subfamily in gibberellin-dependent stamen filament elongation

(2020) Victoria Gastaldi et al.   PLANT PHYSIOLOGY

Class I TCP proteins TCP14 and TCP15 are required for elongation and gene expression responses to auxin

(2020) Lucia V. Ferrero et al.   PLANT MOLECULAR BIOLOGY

The AGCVIII kinase Dw2 modulates cell proliferation, endomembrane trafficking, and MLG/xylan cell wall localization in elongating stem internodes of Sorghum bicolor

(2020) Joel Oliver et al.   PLANT JOURNAL

Role of brassinosteroids in rice spikelet differentiation and degeneration under soil-drying during panicle development

(2019) Weiyang Zhang et al.   BMC PLANT BIOLOGY

Novel Bayesian Networks for Genomic Prediction of Developmental Traits in Biomass Sorghum

(2019) Jhonathan P. R. dos Santos et al.   G3-Genes Genomes Genetics

Function and molecular regulation of DWARF1 as a C-24 reductase in brassinosteroid biosynthesis in Arabidopsis

(2018) Ji Hyun Youn et al.   JOURNAL OF EXPERIMENTAL BOTANY

A genetic link between epigenetic repressor AS1–AS2 and DNA replication factors in establishment of adaxial–abaxial leaf polarity of Arabidopsis

(2018) Toan Quy Luong et al.   Plant Biotechnology

GRF-interacting factor1Regulates Shoot Architecture and Meristem Determinacy in Maize

(2018) Dan Zhang et al.   PLANT CELL

GIF Transcriptional Coregulators Control Root Meristem Homeostasis

(2018) María Florencia Ercoli et al.   PLANT CELL

Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants

(2018) Kranthi Varala et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Auxin sensing is a property of an unstructured domain in the Auxin Response Factor ETTIN of Arabidopsis thaliana

(2018) Sara Simonini et al.   Scientific Reports

PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants

(2018) Chi-Nga Chow et al.   NUCLEIC ACIDS RESEARCH

Auxin-Induced Modulation of ETTIN Activity Orchestrates Gene Expression in Arabidopsis

(2017) Sara Simonini et al.   PLANT CELL

The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization

(2017) Ryan F. McCormick et al.   PLANT JOURNAL

Sorghum DW1 positively regulates brassinosteroid signaling by inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2

(2017) Ko Hirano et al.   Scientific Reports

Sorghum Dw2 Encodes a Protein Kinase Regulator of Stem Internode Length

(2017) Josie L. Hilley et al.   Scientific Reports

Dynamics of biomass partitioning, stem gene expression, cell wall biosynthesis, and sucrose accumulation during development ofSorghum bicolor

(2016) Brian McKinley et al.   PLANT JOURNAL

Quantitative 3D Analysis of Plant Roots growing in Soil using Magnetic Resonance Imaging

(2016) Dagmar van Dusschoten et al.   PLANT PHYSIOLOGY

Identification of Dw1, a Regulator of Sorghum Stem Internode Length

(2016) Josie Hilley et al.   PLoS One

TCP14 and TCP15 Mediate the Promotion of Seed Germination by Gibberellins in Arabidopsis thaliana

(2015) Francesca Resentini et al.   Molecular Plant

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Divide et impera : boundaries shape the plant body and initiate new meristems

(2015) Quan Wang et al.   NEW PHYTOLOGIST

Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf

(2015) Hilde Nelissen et al.   PLANT CELL

Bioenergy and climate change mitigation: an assessment

(2015) Felix Creutzig et al.   Global Change Biology Bioenergy

Analysis of the arabidopsis REM gene family predicts functions during flower development

(2014) Otho Mantegazza et al.   ANNALS OF BOTANY

Energy Sorghum--a genetic model for the design of C4 grass bioenergy crops

(2014) J. Mullet et al.   JOURNAL OF EXPERIMENTAL BOTANY

Overexpression of the maizeGRF10, an endogenous truncated growth-regulating factor protein, leads to reduction in leaf size and plant height

(2014) Lei Wu et al.   Journal of Integrative Plant Biology

Ontogeny of the sheathing leaf base in maize (Zea mays)

(2014) Robyn Johnston et al.   NEW PHYTOLOGIST

MOROKOSHI: Transcriptome Database in Sorghum bicolor

(2014) Yuko Makita et al.   PLANT AND CELL PHYSIOLOGY

ANGUSTIFOLIA3 Binds to SWI/SNF Chromatin Remodeling Complexes to Regulate Transcription during Arabidopsis Leaf Development

(2014) L. Vercruyssen et al.   PLANT CELL

Post-transcriptional control ofGRFtranscription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity

(2014) Juan M. Debernardi et al.   PLANT JOURNAL

Differential Methylation during Maize Leaf Growth Targets Developmentally Regulated Genes

(2014) J. Candaele et al.   PLANT PHYSIOLOGY

The node, a hub for mineral nutrient distribution in graminaceous plants

(2014) Naoki Yamaji et al.   TRENDS IN PLANT SCIENCE

ARABIDOPSIS THALIANA HOMEOBOX25 Uncovers a Role for Gibberellins in Seed Longevity

(2013) E. Bueso et al.   PLANT PHYSIOLOGY

High biomass yield energy sorghum: developing a genetic model for C4 grass bioenergy crops

(2012) Sara N. Olson et al.   Biofuels Bioproducts & Biorefining-Biofpr

Arabidopsis LATERAL ORGAN BOUNDARIES negatively regulates brassinosteroid accumulation to limit growth in organ boundaries

(2012) E. M. Bell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ASYMMETRIC LEAVES2 and Elongator, a Histone Acetyltransferase Complex, Mediate the Establishment of Polarity in Leaves of Arabidopsis thaliana

(2011) Shoko Kojima et al.   PLANT AND CELL PHYSIOLOGY

Auxin stimulates DWARF4 expression and brassinosteroid biosynthesis in Arabidopsis

(2011) Yuhee Chung et al.   PLANT JOURNAL

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Auxin Transporters--Why So Many?

(2009) E. Zazimalova et al.   Cold Spring Harbor Perspectives in Biology

Isolation and characterization of genes encoding GRF transcription factors and GIF transcriptional coactivators in Maize (Zea mays L.)

(2008) Deng-Feng Zhang et al.   PLANT SCIENCE