FE UPTAKE‐INDUCING PEPTIDE1 maintains Fe translocation by controlling Fe deficiency response genes in the vascular tissue of Arabidopsis

Iron Availability within the Leaf Vasculature Determines the Magnitude of Iron Deficiency Responses in Source and Sink Tissues in Arabidopsis

(2022) Nga T Nguyen et al.   PLANT AND CELL PHYSIOLOGY

Systemic Regulation of Iron Acquisition by Arabidopsis in Environments with Heterogeneous Iron Distributions

(2022) Ryo Tabata et al.   PLANT AND CELL PHYSIOLOGY

The Iron Deficiency-Regulated Small Protein Effector FEP3/IRON MAN1 Modulates Interaction of BRUTUS-LIKE1 With bHLH Subgroup IVc and POPEYE Transcription Factors

(2022) Daniela M. Lichtblau et al.   Frontiers in Plant Science

IRONMAN tunes responses to iron deficiency in concert with environmental pH

(2021) Chandan Kumar Gautam et al.   PLANT PHYSIOLOGY

IRON MAN interacts with BRUTUS to maintain iron homeostasis in Arabidopsis

(2021) Yang Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root‐to‐shoot iron partitioning in Arabidopsis requires IRON‐REGULATED TRANSPORTER1 (IRT1) protein but not its iron(II) transport function

(2021) Julia Quintana et al.   PLANT JOURNAL

FIT, a regulatory hub for iron deficiency and stress signaling in roots, and FIT-dependent and -independent gene signatures

(2020) Birte Schwarz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice

(2020) Takanori Kobayashi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional integration of plant responses to iron availability

(2020) Fei Gao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Coumarin accumulation and trafficking in Arabidopsis thaliana : a complex and dynamic process

(2020) Kevin Robe et al.   NEW PHYTOLOGIST

Phloem companion cell-specific transcriptomic and epigenomic analyses identify MRF1, a novel regulator of flowering

(2019) Yuan You et al.   PLANT CELL

The Transcriptional Control of Iron Homeostasis in Plants: A Tale of bHLH Transcription Factors?

(2019) Fei Gao et al.   Frontiers in Plant Science

Hemerythrin E3 Ubiquitin Ligases as Negative Regulators of Iron Homeostasis in Plants

(2019) Jorge Rodríguez-Celma et al.   Frontiers in Plant Science

Understanding the Complexity of Iron Sensing and Signaling Cascades in Plants

(2019) Takanori Kobayashi   PLANT AND CELL PHYSIOLOGY

Transcriptional integration of the responses to iron availability in Arabidopsis by the bHLH factor ILR3

(2019) Nicolas Tissot et al.   NEW PHYTOLOGIST

The Adaptive Mechanism of Plants to Iron Deficiency via Iron Uptake, Transport, and Homeostasis

(2019) Xinxin Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Connecting the negatives and positives of plant iron homeostasis

(2019) Gretchen E. Kroh et al.   NEW PHYTOLOGIST

Iron acquisition strategies in land plants: not so different after all

(2019) Louis Grillet et al.   NEW PHYTOLOGIST

The Transcription Factor bHLH121 Interacts with bHLH105 (ILR3) and its Closest Homologs to Regulate Iron Homeostasis in Arabidopsis

(2019) Fei Gao et al.   PLANT CELL

Intertwined metal homeostasis, oxidative and biotic stress responses in the Arabidopsis frd3 mutant

(2019) Maxime Scheepers et al.   PLANT JOURNAL

The iron deficiency response in Arabidopsis thaliana requires the phosphorylated transcription factor URI

(2019) Sun A. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scopoletin 8-hydroxylase: a novel enzyme involved in coumarin biosynthesis and iron-deficiency responses in Arabidopsis

(2018) Joanna Siwinska et al.   JOURNAL OF EXPERIMENTAL BOTANY

Biosynthesis of redox-active metabolites in response to iron deficiency in plants

(2018) Jakub Rajniak et al.   Nature Chemical Biology

The putative peptide gene FEP1 regulates iron deficiency response in Arabidopsis

(2018) Takashi Hirayama et al.   PLANT AND CELL PHYSIOLOGY

Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots

(2018) Mather A. Khan et al.   PLANT CELL AND ENVIRONMENT

Scopoletin 8-Hydroxylase-Mediated Fraxetin Production is Crucial for Iron Mobilization

(2018) Huei-Hsuan Tsai et al.   PLANT PHYSIOLOGY

bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana

(2017) Gang Liang et al.   JOURNAL OF EXPERIMENTAL BOTANY

BRUTUS and its paralogs, BTS LIKE1 and BTS LIKE2, encode important negative regulators of the iron deficiency response in Arabidopsis thaliana

(2017) Maria N. Hindt et al.   Metallomics

Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis inArabidopsis thaliana

(2016) Xiaoli Li et al.   PLANT PHYSIOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Molecular mechanisms governing Arabidopsis iron uptake

(2015) Tzvetina Brumbarova et al.   TRENDS IN PLANT SCIENCE

Local and systemic signaling of iron status and its interactions with homeostasis of other essential elements

(2015) Sheena R. Gayomba et al.   Frontiers in Plant Science

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

OPT3 Is a Component of the Iron-Signaling Network between Leaves and Roots and Misregulation of OPT3 Leads to an Over-Accumulation of Cadmium in Seeds

(2014) David G. Mendoza-Cózatl et al.   Molecular Plant

OPT3 Is a Phloem-Specific Iron Transporter That Is Essential for Systemic Iron Signaling and Redistribution of Iron and Cadmium in Arabidopsis

(2014) Z. Zhai et al.   PLANT CELL

Iron-Binding E3 Ligase Mediates Iron Response in Plants by Targeting Basic Helix-Loop-Helix Transcription Factors

(2014) Devarshi Selote et al.   PLANT PHYSIOLOGY

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation

(2013) Takanori Kobayashi et al.   Nature Communications

The transcriptional response of Arabidopsis leaves to Fe deficiency

(2013) Jorge Rodríguez-Celma et al.   Frontiers in Plant Science

Iron Uptake, Translocation, and Regulation in Higher Plants

(2012) Takanori Kobayashi et al.   Annual Review of Plant Biology

Arabidopsis bHLH100 and bHLH101 Control Iron Homeostasis via a FIT-Independent Pathway

(2012) Alicia B. Sivitz et al.   PLoS One

The bHLH Transcription Factor POPEYE Regulates Response to Iron Deficiency in Arabidopsis Roots

(2010) T. A. Long et al.   PLANT CELL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The Ferroportin Metal Efflux Proteins Function in Iron and Cobalt Homeostasis in Arabidopsis

(2009) J. Morrissey et al.   PLANT CELL

FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis

(2008) Youxi Yuan et al.   CELL RESEARCH