Prenatal immune stress blunts microglia reactivity, impairing neurocircuitry

Integrated analysis of multimodal single-cell data

(2021) Yuhan Hao et al.   CELL

Advantages and Limitations of the Neonatal Immune System

(2020) George P. Tsafaras et al.   Frontiers in Pediatrics

Time course regulatory analysis based on paired expression and chromatin accessibility data

(2020) Zhana Duren et al.   GENOME RESEARCH

Neuroinflammation as measured by positron emission tomography in patients with recent onset and established schizophrenia: implications for immune pathogenesis

(2020) Silke Conen et al.   MOLECULAR PSYCHIATRY

Metabolic Flexibility Assists Reprograming of Central and Peripheral Innate Immunity During Neurodevelopment

(2020) Gabriela Cruz-Carrillo et al.   MOLECULAR NEUROBIOLOGY

Negative feedback control of neuronal activity by microglia

(2020) Ana Badimon et al.   NATURE

ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation

(2020) Mette Bentsen et al.   Nature Communications

glmGamPoi: Fitting Gamma-Poisson Generalized Linear Models on Single Cell Count Data

(2020) Constantin Ahlmann-Eltze et al.   BIOINFORMATICS

Microglia elimination increases neural circuit connectivity and activity in adult mouse cortex

(2020) Yong-Jun Liu et al.   JOURNAL OF NEUROSCIENCE

Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer’s disease

(2020) Marta Olah et al.   Nature Communications

Landscape and Dynamics of the Transcriptional Regulatory Network During Natural Killer Cell Differentiation

(2020) Kun Li et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Chromatin accessibility and the regulatory epigenome

(2019) Sandy L. Klemm et al.   NATURE REVIEWS GENETICS

IRF and STAT Transcription Factors - From Basic Biology to Roles in Infection, Protective Immunity, and Primary Immunodeficiencies

(2019) Trine H. Mogensen   Frontiers in Immunology

Spatial and temporal heterogeneity of mouse and human microglia at single-cell resolution

(2019) Takahiro Masuda et al.   NATURE

Improved CUT&RUN chromatin profiling tools

(2019) Michael P Meers et al.   eLife

IL-17a promotes sociability in mouse models of neurodevelopmental disorders

(2019) Michael Douglas Reed et al.   NATURE

Controversies and prospects about microglia in maternal immune activation models for neurodevelopmental disorders

(2018) Silke Smolders et al.   BRAIN BEHAVIOR AND IMMUNITY

Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner

(2018) Morgane Sonia Thion et al.   CELL

Single‐cell transcriptomics reveals distinct inflammation‐induced microglia signatures

(2018) Carole Sousa et al.   EMBO REPORTS

Innate immune memory in the brain shapes neurological disease hallmarks

(2018) Ann-Christin Wendeln et al.   NATURE

Sex Hormones Determine Immune Response

(2018) Veena Taneja   Frontiers in Immunology

Developmental Heterogeneity of Microglia and Brain Myeloid Cells Revealed by Deep Single-Cell RNA Sequencing

(2018) Qingyun Li et al.   NEURON

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019

(2018) Annalisa Buniello et al.   NUCLEIC ACIDS RESEARCH

Generation of a microglial developmental index in mice and in humans reveals a sex difference in maturation and immune reactivity

(2017) Richa Hanamsagar et al.   GLIA

Reversing behavioural abnormalities in mice exposed to maternal inflammation

(2017) Yeong Shin Yim et al.   NATURE

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

(2017) M Ryan Corces et al.   NATURE METHODS

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

(2017) Ivan V Kulakovskiy et al.   NUCLEIC ACIDS RESEARCH

Modeling gene regulation from paired expression and chromatin accessibility data

(2017) Zhana Duren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Interferon (IFN) Class of Cytokines and the IFN Regulatory Factor (IRF) Transcription Factor Family

(2017) Hideo Negishi et al.   Cold Spring Harbor Perspectives in Biology

The Lifespan and Turnover of Microglia in the Human Brain

(2017) Pedro Réu et al.   Cell Reports

An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites

(2017) Peter J Skene et al.   eLife

Dynamic Gene Regulatory Networks of Human Myeloid Differentiation

(2017) Ricardo N. Ramirez et al.   Cell Systems

Maternal Immune Activation Disrupts Dopamine System in the Offspring

(2016) Antonio Luchicchi et al.   INTERNATIONAL JOURNAL OF NEUROPSYCHOPHARMACOLOGY

Schizophrenia

(2016) Michael J Owen et al.   LANCET

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

New tools for studying microglia in the mouse and human CNS

(2016) Mariko L. Bennett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In vivo markers of inflammatory response in recent-onset schizophrenia: a combined study using [11C]DPA-713 PET and analysis of CSF and plasma

(2016) J M Coughlin et al.   Translational Psychiatry

Molecular substrates of schizophrenia: homeostatic signaling to connectivity

(2015) M A Landek-Salgado et al.   MOLECULAR PSYCHIATRY

The DNA damage response induces inflammation and senescence by inhibiting autophagy of GATA4

(2015) C. Kang et al.   SCIENCE

Individuality and Variation of Personal Regulomes in Primary Human T Cells

(2015) Kun Qu et al.   Cell Systems

Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape

(2014) J. Gray Camp et al.   GENOME RESEARCH

Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape

(2014) Richard I Sherwood et al.   NATURE BIOTECHNOLOGY

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Inflammatory Molecular Signature Associated With Infectious Agents in Psychosis

(2014) Lindsay N. Hayes et al.   SCHIZOPHRENIA BULLETIN

Microglia Modulate Wiring of the Embryonic Forebrain

(2014) Paola Squarzoni et al.   Cell Reports

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

(2012) Caryn S. Ross-Innes et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Primary Microglia Isolation from Mixed Glial Cell Cultures of Neonatal Rat Brain Tissue

(2012) Tami T. Tamashiro et al.   Jove-Journal of Visualized Experiments

Fate Mapping Analysis Reveals That Adult Microglia Derive from Primitive Macrophages

(2010) F. Ginhoux et al.   SCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Examining the Intersection of Sex and Stress in Modelling Neuropsychiatric Disorders

(2009) N. Goel et al.   JOURNAL OF NEUROENDOCRINOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY