Measuring Local Electrostatic Potentials Around Nucleic Acids by Paramagnetic NMR Spectroscopy

Protein Electrostatics Investigated through Paramagnetic NMR for Nonpolar Groups

(2022) Binhan Yu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Slow Rotational Dynamics of Cytosine NH2 Groups in Double-Stranded DNA

(2022) Xi Wang et al.   BIOCHEMISTRY

Assessment of the Components of the Electrostatic Potential of Proteins in Solution: Comparing Experiment and Theory

(2022) Chuanying Chen et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Mapping the per-residue surface electrostatic potential of CAPRIN1 along its phase-separation trajectory

(2022) Yuki Toyama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The structural plasticity of nucleic acid duplexes revealed by WAXS and MD

(2021) Weiwei He et al.   Science Advances

De novo determination of near-surface electrostatic potentials by NMR

(2021) Binhan Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Similarities and Differences between Na+ and K+ Distributions around DNA Obtained with Three Popular Water Models

(2021) Egor S. Kolesnikov et al.   Journal of Chemical Theory and Computation

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

The roles of structural dynamics in the cellular functions of RNAs

(2019) Laura R. Ganser et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Improvements to the APBS biomolecular solvation software suite

(2017) Elizabeth Jurrus et al.   PROTEIN SCIENCE

Counting the ions surrounding nucleic acids

(2016) David R. Jacobson et al.   NUCLEIC ACIDS RESEARCH

Characterizing excited conformational states of RNA by NMR spectroscopy

(2015) Bo Zhao et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Competition among Li+, Na+, K+, and Rb+ Monovalent Ions for DNA in Molecular Dynamics Simulations Using the Additive CHARMM36 and Drude Polarizable Force Fields

(2015) Alexey Savelyev et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Competitive interaction of monovalent cations with DNA from 3D-RISM

(2015) George M. Giambaşu et al.   NUCLEIC ACIDS RESEARCH

Understanding Nucleic Acid–Ion Interactions

(2014) Jan Lipfert et al.   Annual Review of Biochemistry

Characterizing the Protonation State of Cytosine in Transient G·C Hoogsteen Base Pairs in Duplex DNA

(2013) Evgenia N. Nikolova et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Transient Hoogsteen base pairs in canonical duplex DNA

(2011) Evgenia N. Nikolova et al.   NATURE

Ion and Solvent Density Distributions around Canonical B-DNA from Integral Equations

(2010) Jesse J. Howard et al.   JOURNAL OF PHYSICAL CHEMISTRY B