Variations in Bacterial Communities and Antibiotic Resistance Genes Across Diverse Recycled and Surface Water Irrigation Sources in the Mid-Atlantic and Southwest United States: A CONSERVE Two-Year Field Study

Antibiotic resistomes in water supply reservoirs sediments of central China: main biotic drivers and distribution pattern

(2022) Kai Zhang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis

(2022) Christopher JL Murray et al.   LANCET

Systematic review and meta-analysis of environmental Vibrio species – antibiotic resistance

(2022) H. Onohuean et al.   Heliyon

Effects of season and water type on the distribution and antimicrobial resistance of Enterococcus faecalis and Ent. faecium from surface and reclaimed water

(2022) Sultana Solaiman et al.   JOURNAL OF APPLIED MICROBIOLOGY

Enteric Viruses and Pepper Mild Mottle Virus Show Significant Correlation in Select Mid-Atlantic Agricultural Waters

(2021) Brienna L. Anderson-Coughlin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Removal of Pathogens in Onsite Wastewater Treatment Systems: A Review of Design Considerations and Influencing Factors

(2021) Mian Wang et al.   Water

Human Pathogenic Bacteria Detected in Rainwater: Risk Assessment and Correlation to Microbial Source Tracking Markers and Traditional Indicators

(2021) Julia K. Denissen et al.   Frontiers in Microbiology

Coupled DNA-labeling and sequencing approach enables the detection of viable-but-non-culturable Vibrio spp. in irrigation water sources in the Chesapeake Bay watershed

(2021) Leena Malayil et al.   Environmental Microbiome

Antibiogram signatures of Vibrio species recovered from surface waters in South Western districts of Uganda: Implications for environmental pollution and infection control

(2021) Hope Onohuean et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Environmental Biofilms as Reservoirs for Antimicrobial Resistance

(2021) Gabriela Flores-Vargas et al.   Frontiers in Microbiology

Levels of Salmonella enterica and Listeria monocytogenes in Alternative Irrigation Water Vary Based on Water Source on the Eastern Shore of Maryland

(2021) Chanelle L. Acheamfour et al.   Microbiology Spectrum

Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data

(2020) Jasmine Chong et al.   Nature Protocols

Prevalence of Salmonella and Listeria monocytogenes in non-traditional irrigation waters in the Mid-Atlantic United States is affected by water type, season, and recovery method

(2020) Manan Sharma et al.   PLoS One

Co‐occurrence of antibiotic, biocide, and heavy metal resistance genes in bacteria from metal and radionuclide contaminated soils at the Savannah River Site

(2020) Jesse C. Thomas et al.   Microbial Biotechnology

A longitudinal assessment of Escherichia coli, total coliforms, Enterococcus and Aeromonas spp. dynamics in alternative irrigation water sources: A CONSERVE study

(2020) Sultana Solaiman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mentholation triggers brand-specific shifts in the bacterial microbiota of commercial cigarette products

(2020) Leena Malayil et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metabolically-active bacteria in reclaimed water and ponds revealed using bromodeoxyuridine DNA labeling coupled with 16S rRNA and shotgun sequencing

(2020) Leena Malayil et al.   WATER RESEARCH

Falling bacterial communities from the atmosphere

(2020) Cheolwoon Woo et al.   Environmental Microbiome

Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform

(2019) Johanna B. Holm et al.   mSystems

Campylobacteriosis Outbreak Associated with Contaminated Municipal Water Supply — Nebraska, 2017

(2019) Caitlin Pedati et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

Creek to Table: Tracking fecal indicator bacteria, bacterial pathogens, and total bacterial communities from irrigation water to kale and radish crops

(2019) Sarah M. Allard et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Pharmaceuticals, herbicides, and disinfectants in agricultural water sources

(2019) Suraj Panthi et al.   ENVIRONMENTAL RESEARCH

Antibiotic Use in Food Animals in the World with Focus on Africa: Pluses and Minuses

(2019) Thi Thu Hao Van et al.   Journal of Global Antimicrobial Resistance

Catchment scale analysis of occurrence of antibiotic resistance genes in treated wastewater

(2019) Małgorzata Czatzkowska et al.   ECOHYDROLOGY & HYDROBIOLOGY

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

(2019) Brian P Alcock et al.   NUCLEIC ACIDS RESEARCH

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data

(2019) Enrique Doster et al.   NUCLEIC ACIDS RESEARCH

Preharvest Transmission Routes of Fresh Produce Associated Bacterial Pathogens with Outbreak Potentials: A Review

(2019) Chidozie Declan Iwu et al.   International Journal of Environmental Research and Public Health

The Bacterial Communities of Little Cigars and Cigarillos Are Dynamic Over Time and Varying Storage Conditions

(2019) Eoghan M. Smyth et al.   Frontiers in Microbiology

Shiga Toxin–Producing Escherichia coli Infections Associated With Romaine Lettuce—United States, 2018

(2019) Lyndsay Bottichio et al.   CLINICAL INFECTIOUS DISEASES

Metagenomic analysis of viruses, bacteria and protozoa in irrigation water

(2019) Marta Rusiñol et al.   INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH

Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications

(2019) Jessica Chopyk et al.   WATER RESEARCH

Metagenomic Characterization of Antibiotic Resistance Genes in Full-Scale Reclaimed Water Distribution Systems and Corresponding Potable Systems

(2018) Emily Garner et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The prevalence of multidrug-resistant Aeromonas spp. in the municipal wastewater system and their dissemination in the environment

(2018) Monika Harnisz et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations

(2018) Jessica Chopyk et al.   Frontiers in Microbiology

and in Wastewater and Surface Water Environments

(2018) Kerry A. Hamilton et al.   JOURNAL OF ENVIRONMENTAL QUALITY

Bacterial communities and potential waterborne pathogens within the typical urban surface waters

(2018) Decai Jin et al.   Scientific Reports

Widespread Antibiotic, Biocide, and Metal Resistance in Microbial Communities Inhabiting a Municipal Waste Environment and Anthropogenically Impacted River

(2018) Aneisha M. Collins-Fairclough et al.   mSphere

Incidence of fecal indicator and pathogenic bacteria in reclaimed and return flow waters in Arizona, USA

(2018) Libin Zhu et al.   ENVIRONMENTAL RESEARCH

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Temporal Variations in Cigarette Tobacco Bacterial Community Composition and Tobacco-Specific Nitrosamine Content Are Influenced by Brand and Storage Conditions

(2017) Jessica Chopyk et al.   Frontiers in Microbiology

Occurrence and Variety of β-Lactamase Genes among Aeromonas spp. Isolated from Urban Wastewater Treatment Plant

(2017) Marta Piotrowska et al.   Frontiers in Microbiology

Mentholation affects the cigarette microbiota by selecting for bacteria resistant to harsh environmental conditions and selecting against potential bacterial pathogens

(2017) Jessica Chopyk et al.   Microbiome

MEGARes: an antimicrobial resistance database for high throughput sequencing

(2016) Steven M. Lakin et al.   NUCLEIC ACIDS RESEARCH

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

(2015) Chandan Pal et al.   BMC GENOMICS

Metagenomic analysis of planktonic microbial consortia from a non-tidal urban-impacted segment of James River

(2015) Bonnie L. Brown et al.   Standards in Genomic Sciences

The prevalence of antibiotic resistance genes among Aeromonas species in aquatic environments

(2014) Marta Piotrowska et al.   ANNALS OF MICROBIOLOGY

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

High Throughput Profiling of Antibiotic Resistance Genes in Urban Park Soils with Reclaimed Water Irrigation

(2014) Feng-Hua Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Methicillin-Resistant Staphylococcus aureus (MRSA) Detected at Four U.S. Wastewater Treatment Plants

(2012) Rachel E. Rosenberg Goldstein et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

EmergingAeromonasSpecies Infections and Their Significance in Public Health

(2012) Isoken H. Igbinosa et al.   TheScientificWorldJOURNAL

Antibiotic susceptibility profiles of some Vibrio strains isolated from wastewater final effluents in a rural community of the Eastern Cape Province of South Africa

(2010) Anthony I Okoh et al.   BMC MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Water Microbiology. Bacterial Pathogens and Water

(2010) João P. S. Cabral   International Journal of Environmental Research and Public Health

Salmonellosis Outbreaks in the United States Due to Fresh Produce: Sources and Potential Intervention Measures

(2009) Irene B. Hanning et al.   Foodborne Pathogens and Disease