Metagenomic analysis of planktonic microbial consortia from a non-tidal urban-impacted segment of James River

Large-scale contamination of microbial isolate genomes by Illumina PhiX control

(2015) Supratim Mukherjee et al.   Standards in Genomic Sciences

Biodegradation of Endocrine Disruptors in Solid-Liquid Two-Phase Partitioning Systems by Enrichment Cultures

(2013) Richard Villemur et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River

(2013) C. Staley et al.   JOURNAL OF APPLIED MICROBIOLOGY

Antibiotic-resistant bacteria in the Hudson River Estuary linked to wet weather sewage contamination

(2013) Suzanne Young et al.   JOURNAL OF WATER AND HEALTH

The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria

(2013) Elizabeth MH Wellington et al.   LANCET INFECTIOUS DISEASES

A Microbial Signature Approach to Identify Fecal Pollution in the Waters Off an Urbanized Coast of Lake Michigan

(2013) Ryan J. Newton et al.   MICROBIAL ECOLOGY

Reference-independent comparative metagenomics using cross-assembly: crAss

(2012) Bas E. Dutilh et al.   BIOINFORMATICS

A Survey of Drug Resistance bla Genes Originating from Synthetic Plasmid Vectors in Six Chinese Rivers

(2012) Jian Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Comparative Metagenomics of Toxic Freshwater Cyanobacteria Bloom Communities on Two Continents

(2012) Morgan M. Steffen et al.   PLoS One

Metagenomes of Mediterranean Coastal Lagoons

(2012) Rohit Ghai et al.   Scientific Reports

Metagenomic Insights into the Evolution, Function, and Complexity of the Planktonic Microbial Community of Lake Lanier, a Temperate Freshwater Ecosystem

(2011) Seungdae Oh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads

(2011) Andrea K. Bartram et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Recurrent Intravascular-Catheter-Related Bacteremia Caused by Delftia acidovorans in a Hemodialysis Patient

(2011) Kobkul Chotikanatis et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Evidence for several waves of global transmission in the seventh cholera pandemic

(2011) Ankur Mutreja et al.   NATURE

Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River

(2011) Rohit Ghai et al.   PLoS One

Use of Barcoded Pyrosequencing and Shared OTUs To Determine Sources of Fecal Bacteria in Watersheds

(2010) Tatsuya Unno et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Antibiotic Resistance Gene Abundances Associated with Waste Discharges to the Almendares River near Havana, Cuba

(2010) David W. Graham et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

CONTAMINATION OF SURFACE, GROUND, AND DRINKING WATER FROM PHARMACEUTICAL PRODUCTION

(2009) Jerker Fick et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS