Deposition and eviction of histone variants define functional chromatin states in plants

NuA4 and H2A.Z control environmental responses and autotrophic growth in Arabidopsis

(2022) Tomasz Bieluszewski et al.   Nature Communications

The histone H3.1 variant regulates TONSOKU-mediated DNA repair during replication

(2022) Hossein Davarinejad et al.   SCIENCE

Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis

(2021) Michael Borg et al.   eLife

The Histone Chaperone HIRA Is a Positive Regulator of Seed Germination

(2021) Elodie Layat et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Histone variants at a glance

(2021) Paul B. Talbert et al.   JOURNAL OF CELL SCIENCE

The chromatin remodeler DDM1 prevents transposon mobility through deposition of histone variant H2A.W

(2021) Akihisa Osakabe et al.   NATURE CELL BIOLOGY

The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation

(2021) Pierre Bourguet et al.   Nature Communications

Polycomb-dependent differential chromatin compartmentalization determines gene coregulation in Arabidopsis

(2021) Ying Huang et al.   GENOME RESEARCH

The INO80 chromatin remodeling complex promotes thermomorphogenesis by connecting H2A.Z eviction and active transcription in Arabidopsis

(2021) Mande Xue et al.   Molecular Plant

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Unraveling linker histone interactions in nucleosomes

(2021) Fanfan Hao et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Epigenetically mismatched parental centromeres trigger genome elimination in hybrids

(2021) Mohan P. A. Marimuthu et al.   Science Advances

A plant‐specific SWR1 chromatin‐remodeling complex couples histone H2A.Z deposition with nucleosome sliding

(2020) Yu‐Xi Luo et al.   EMBO JOURNAL

Similar yet Critically Different: The distribution, dynamics and function of Histone Variants

(2020) Aline V Probst et al.   JOURNAL OF EXPERIMENTAL BOTANY

Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin

(2020) Michael Borg et al.   NATURE CELL BIOLOGY

NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis

(2020) Yafei Wang et al.   Nature Communications

The evolution and functional divergence of the histone H2B family in plants

(2020) Danhua Jiang et al.   PLoS Genetics

Plant Histone HTB (H2B) Variants in Regulating Chromatin Structure and Function

(2020) Janardan Khadka et al.   Plants-Basel

NAP1-Related Protein 1 (NRP1) has multiple interaction modes for chaperoning histones H2A-H2B

(2020) Qiang Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The repressive role of Arabidopsis H2A.Z in transcriptional regulation depends on AtBMI1 activity

(2019) Ángeles Gómez-Zambrano et al.   Nature Communications

Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition

(2019) Magdalena E. Potok et al.   Nature Communications

The H3 histone chaperone NASP SIM 3 escorts CenH3 in Arabidopsis

(2019) Samuel Le Goff et al.   PLANT JOURNAL

Methyl-CpG-binding domain 9 (MBD9) is required for H2A.Z incorporation into chromatin at a subset of H2A.Z-enriched regions in the Arabidopsis genome

(2019) Paja Sijacic et al.   PLoS Genetics

Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes

(2018) Ángeles Gómez-Zambrano et al.   Molecular Plant

Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development

(2018) Matthias Benoit et al.   NEW PHYTOLOGIST

Histone H2A variants confer specific properties to nucleosomes and impact on chromatin accessibility

(2018) Akihisa Osakabe et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis ATRX Modulates H3.3 Occupancy and Fine-Tunes Gene Expression

(2017) Céline Duc et al.   PLANT CELL

DNA replication–coupled histone modification maintains Polycomb gene silencing in plants

(2017) Danhua Jiang et al.   SCIENCE

Evolution of histone H3: emergence of variants and conservation of post-translational modification sites1This article is part of Special Issue entitled Asilomar Chromatin and has undergone the Journal’s usual peer review process.

(2017) Jakob H. Waterborg   Biochemistry and Cell Biology

Genome-wide analysis of chromatin packing inArabidopsis thalianaat single-gene resolution

(2016) Chang Liu et al.   GENOME RESEARCH

Histone H3 Dynamics Reveal Domains with Distinct Proliferation Potential in the Arabidopsis Root

(2016) Sofía Otero et al.   PLANT CELL

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

The histone chaperone complex HIR maintains nucleosome occupancy and counterbalances impaired histone deposition in CAF-1 complex mutants

(2015) Céline Duc et al.   PLANT JOURNAL

Diversification of histone H2A variants during plant evolution

(2015) Tomokazu Kawashima et al.   TRENDS IN PLANT SCIENCE

The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis

(2014) Ramesh Yelagandula et al.   CELL

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

(2014) J. Sequeira-Mendes et al.   PLANT CELL

Selective Methylation of Histone H3 Variant H3.1 Regulates Heterochromatin Replication

(2014) Y. Jacob et al.   SCIENCE

The HIRA complex that deposits the histone H3.3 is conserved in Arabidopsis and facilitates transcriptional dynamics

(2014) X. Nie et al.   Biology Open

Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana

(2012) H. Stroud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes

(2012) Devin Coleman-Derr et al.   PLoS Genetics

Four amino acids guide the assembly or disassembly of Arabidopsis histone H3.3-containing nucleosomes

(2011) L. Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Zygotic Resetting of the HISTONE 3 Variant Repertoire Participates in Epigenetic Reprogramming in Arabidopsis

(2010) Mathieu Ingouff et al.   CURRENT BIOLOGY

The Rapidly Evolving Centromere-Specific Histone Has Stringent Functional Requirements in Arabidopsis thaliana

(2010) M. Ravi et al.   GENETICS

Histone variants — ancient wrap artists of the epigenome

(2010) Paul B. Talbert et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis

(2009) S. Vinod Kumar et al.   CELL

Transcriptional and Developmental Functions of the H3.3 Histone Variant in Drosophila

(2009) Akiko Sakai et al.   CURRENT BIOLOGY

H3.3/H2A.Z double variant–containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

(2009) Chunyuan Jin et al.   NATURE GENETICS

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

(2008) Daniel Zilberman et al.   NATURE