Neisseria species as pathobionts in bronchiectasis

Microbiome differential abundance methods produce different results across 38 datasets

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Integrative microbiomics in bronchiectasis exacerbations

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Experimental parameters defining ultra-low biomass bioaerosol analysis

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Rothia mucilaginosa is an anti-inflammatory bacterium in the respiratory tract of patients with chronic lung disease

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Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota

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Metagenomics Reveals a Core Macrolide Resistome Related to Microbiota in Chronic Respiratory Disease

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Environmental fungal sensitisation associates with poorer clinical outcomes in COPD

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Analysis of compositions of microbiomes with bias correction

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A Novel Mechanism of Monoethylhexyl Phthalate in Lipid Accumulation via Inhibiting Fatty Acid Beta-Oxidation on Hepatic Cells

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Episodic Aspiration with Oral Commensals Induces a MyD88-dependent, Pulmonary T-Helper Cell Type 17 Response that Mitigates Susceptibility to Streptococcus pneumoniae

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Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

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Microbiome networks and change-point analysis reveal key community changes associated with cystic fibrosis pulmonary exacerbations

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Autonomous METLIN-Guided In-source Fragment Annotation for Untargeted Metabolomics

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Functional effects of the microbiota in chronic respiratory disease

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Bronchiectasis in India: results from the European Multicentre Bronchiectasis Audit and Research Collaboration (EMBARC) and Respiratory Research Network of India Registry

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The microbiome in bronchiectasis

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Microbial communities in the tropical air ecosystem follow a precise diel cycle

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RESPIRE: breathing new life into bronchiectasis

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IMMUNOLOGICAL COROLLARY OF THE PULMONARY MYCOBIOME IN BRONCHIECTASIS: THE CAMEB STUDY

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RESPIRE 1: a phase III placebo-controlled randomised trial of ciprofloxacin dry powder for inhalation in non-cystic fibrosis bronchiectasis

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RESPIRE 2: a phase III placebo-controlled randomised trial of ciprofloxacin dry powder for inhalation in non-cystic fibrosis bronchiectasis

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Geographic variation in the aetiology, epidemiology and microbiology of bronchiectasis

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The Role of the Immune Response in the Pathogenesis of Bronchiectasis

(2018) Paul T. King   Biomed Research International

Bronchiectasis: new therapies and new perspectives

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Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites

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Distinct 'Immuno-Allertypes' of Disease and High Frequencies of Sensitisation in Non-Cystic-Fibrosis Bronchiectasis

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Advances in bronchiectasis: endotyping, genetics, microbiome, and disease heterogeneity

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A New Bronchiectasis Endophenotype: Immuno-allertypes.

(2018) Pamela J McShane   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Bronchiectasis

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Pulmonary exacerbation in adults with bronchiectasis: a consensus definition for clinical research

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Microbiomes in respiratory health and disease: An Asia-Pacific perspective

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Bacterial Topography of the Healthy Human Lower Respiratory Tract

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Neisseria models of infection and persistence in the upper respiratory tract

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Clinical phenotypes in adult patients with bronchiectasis

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The Lung Microbiome, Immunity, and the Pathogenesis of Chronic Lung Disease

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Fast and sensitive taxonomic classification for metagenomics with Kaiju

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MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

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Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype

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Uncovering oral Neisseria tropism and persistence using metagenomic sequencing

(2016) Claudio Donati et al.   Nature Microbiology

Roary: rapid large-scale prokaryote pan genome analysis

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Non-pathogenic Neisseria: members of an abundant, multi-habitat, diverse genus

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The Bronchiectasis Severity Index. An International Derivation and Validation Study

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Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

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The effect of long-term macrolide treatment on respiratory microbiota composition in non-cystic fibrosis bronchiectasis: an analysis from the randomised, double-blind, placebo-controlled BLESS trial

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Endothelin-1 directs airway remodeling and hyper-reactivity in a murine asthma model

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Toward ‘Omic Scale Metabolite Profiling: A Dual Separation–Mass Spectrometry Approach for Coverage of Lipid and Central Carbon Metabolism

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Application of ’omics technologies to biomarker discovery in inflammatory lung diseases

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Simultaneous extraction of metabolome and lipidome with methyl tert-butyl ether from a single small tissue sample for ultra-high performance liquid chromatography/mass spectrometry

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

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Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

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The role of the bacterial microbiome in lung disease

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The Effect ofAspergillus fumigatusInfection on Vitamin D Receptor Expression in Cystic Fibrosis

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Metagenomic biomarker discovery and explanation

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Sputum Candida albicans Presages FEV 1 Decline and Hospital-Treated Exacerbations in Cystic Fibrosis

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Transcellular Passage of Neisseria meningitidis across a Polarized Respiratory Epithelium

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British Thoracic Society guideline for non-CFbronchiectasis

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Bacteria Challenge in Smoke-exposed Mice Exacerbates Inflammation and Skews the Inflammatory Profile

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Mucosal inflammation in idiopathic bronchiectasis: cellular and molecular mechanisms

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Identification of Genes Particularly Sensitive to Lipopolysaccharide (LPS) in Human Monocytes Induced by Wild-Type versus LPS-Deficient Neisseria meningitidis Strains

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