Combining QTL mapping and RNA-Seq Unravels candidate genes for Alfalfa (Medicago sativa L.) leaf development
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Title
Combining QTL mapping and RNA-Seq Unravels candidate genes for Alfalfa (Medicago sativa L.) leaf development
Authors
Keywords
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Journal
BMC PLANT BIOLOGY
Volume 22, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-10-11
DOI
10.1186/s12870-022-03864-7
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Note: Only part of the references are listed.- QTL Mapping Low-Temperature Germination Ability in the Maize IBM Syn10 DH Population
- (2022) Qinghui Han et al. Plants-Basel
- Detection of quantitative trait loci (QTL) associated with spring regrowth in alfalfa (Medicago sativa L.)
- (2022) Xue-qian JIANG et al. Journal of Integrative Agriculture
- Identification and characterization of regulatory pathways involved in early flowering in the new leaves of alfalfa (Medicago sativa L.) by transcriptome analysis
- (2021) Dongmei Ma et al. BMC PLANT BIOLOGY
- From genes to networks: The genetic control of leaf development
- (2021) Hongfeng Wang et al. Journal of Integrative Plant Biology
- Transcriptional profiling of two contrasting genotypes uncovers molecular mechanisms underlying salt tolerance in alfalfa
- (2021) Rakesh Kaundal et al. Scientific Reports
- Identification of Differential Drought Response Mechanisms in Medicago sativa subsp. sativa and falcata through Comparative Assessments at the Physiological, Biochemical, and Transcriptional Levels
- (2021) Stacy D. Singer et al. Plants-Basel
- Comparative functional genomics analysis of cytochrome P450 gene superfamily in wheat and maize
- (2020) Yixuan Li et al. BMC PLANT BIOLOGY
- Combined QTL mapping and RNA-Seq profiling reveals candidate genes associated with cadmium tolerance in barley
- (2020) Behnam Derakhshani et al. PLoS One
- Allele-aware chromosome-level genome assembly and efficient transgene-free genome editing for the autotetraploid cultivated alfalfa
- (2020) Haitao Chen et al. Nature Communications
- TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
- (2020) Chengjie Chen et al. Molecular Plant
- Identification of a Major QTL and Candidate Gene Analysis of Salt Tolerance at the Bud Burst Stage in Rice (Oryza sativa L.) Using QTL-Seq and RNA-Seq
- (2020) Lei Lei et al. Rice
- Transcriptome-IPMS analysis reveals a tissue-dependent miR156/SPL13 regulatory mechanism in alfalfa drought tolerance
- (2020) Biruk A. Feyissa et al. BMC GENOMICS
- Construction of high‐density genetic linkage map and mapping quantitative trait loci (QTL) for flowering time in autotetraploid alfalfa ( Medicago sativa L.) using genotyping by sequencing
- (2020) Fan Zhang et al. Plant Genome
- Enhanced Expression of QTL qLL9/DEP1 Facilitates the Improvement of Leaf Morphology and Grain Yield in Rice
- (2019) Xue Fu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- QTL fine-mapping of soybean (Glycine max L.) leaf type associated traits in two RILs populations
- (2019) Liang Wang et al. BMC GENOMICS
- High-density linkage map construction and mapping QTL for yield and yield components in autotetraploid alfalfa using RAD-seq
- (2019) Fan Zhang et al. BMC PLANT BIOLOGY
- Quantitative trait loci mapping of leaf rust resistance in tetraploid alfalfa
- (2019) Laxman Adhikari et al. PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY
- QTL mapping for leaf morphology traits in a large maize-teosinte population
- (2019) Yuhua Fu et al. MOLECULAR BREEDING
- QTL mapping of flowering time and biomass yield in tetraploid alfalfa (Medicago sativa L.)
- (2019) Laxman Adhikari et al. BMC PLANT BIOLOGY
- Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
- (2019) Daehwan Kim et al. NATURE BIOTECHNOLOGY
- Molecular networks regulating the cell division during leaf growth in Arabidopsis
- (2019) Jasmien Vercruysse et al. JOURNAL OF EXPERIMENTAL BOTANY
- Genetic Engineering for Global Food Security: Photosynthesis and Biofortification
- (2019) Andrew John Simkin Plants-Basel
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- Comparative analysis of alfalfa (Medicago sativa L.) leaf transcriptomes reveals genotype-specific salt tolerance mechanisms
- (2018) Yunting Lei et al. BMC PLANT BIOLOGY
- Identification and Fine-Mapping of a Major Maize Leaf Width QTL in a Re-sequenced Large Recombinant Inbred Lines Population
- (2018) Baobao Wang et al. Frontiers in Plant Science
- A SNP-Based Linkage Map Revealed QTLs for Resistance to Early and Late Leaf Spot Diseases in Peanut (Arachis hypogaea L.)
- (2018) Suoyi Han et al. Frontiers in Plant Science
- Dissecting Key Adaptation Traits in the Polyploid Perennial Medicago sativa Using GBS-SNP Mapping
- (2018) Laxman Adhikari et al. Frontiers in Plant Science
- TissueEnrich: Tissue-specific gene enrichment analysis
- (2018) Ashish Jain et al. BIOINFORMATICS
- Study on differentially expressed genes related to defoliation traits in two alfalfa varieties based on RNA-Seq
- (2018) Qiming Cheng et al. BMC GENOMICS
- Multiple Regulatory Networks Are Activated during Cold Stress in Medicago sativa L.
- (2018) Qiang Zhou et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice
- (2018) Peizhou Xu et al. Frontiers in Plant Science
- QTL Mapping Combined With Bulked Segregant Analysis Identify SNP Markers Linked to Leaf Shape Traits in Pisum sativum Using SLAF Sequencing
- (2018) Yuanting Zheng et al. Frontiers in Genetics
- Nodulation response to molybdenum supplementation in alfalfa and its correlation with root and shoot growth in low pH soil
- (2017) Laxman Adhikari et al. JOURNAL OF PLANT NUTRITION
- Genetic dissection and validation of candidate genes for flag leaf size in rice (Oryza sativa L.)
- (2017) Xinxin Tang et al. THEORETICAL AND APPLIED GENETICS
- Alteration in Auxin Homeostasis and Signaling by Overexpression Of PINOID Kinase Causes Leaf Growth Defects in Arabidopsis thaliana
- (2017) Kumud Saini et al. Frontiers in Plant Science
- Genetic architecture of flag leaf length and width in rice (Oryza sativa L.) revealed by association mapping
- (2016) Jiantao Wu et al. Genes & Genomics
- Forever Young: The Role of Ubiquitin Receptor DA1 and E3 Ligase BIG BROTHER in Controlling Leaf Growth and Development
- (2016) Hannes Vanhaeren et al. PLANT PHYSIOLOGY
- How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
- (2016) Nicholas J. Schurch et al. RNA
- Identification of QTL underlying physiological and morphological traits of flag leaf in barley
- (2015) Lipan Liu et al. BMC GENETICS
- The Medicago sativa gene index 1.2: a web-accessible gene expression atlas for investigating expression differences between Medicago sativa subspecies
- (2015) Jamie A. O’Rourke et al. BMC GENOMICS
- QTLs for flag leaf size and their influence on yield-related traits in wheat (Triticum aestivum L.)
- (2015) Xiaoli Fan et al. MOLECULAR BREEDING
- Inclusive Composite Interval Mapping of QTL by Environment Interactions in Biparental Populations
- (2015) Shanshan Li et al. PLoS One
- Fine-mapping of a major QTL controlling angular leaf spot resistance in common bean (Phaseolus vulgaris L.)
- (2015) Beat Keller et al. THEORETICAL AND APPLIED GENETICS
- Detection of QTL for forage yield, lodging resistance and spring vigor traits in alfalfa (Medicago sativa L.)
- (2014) Per McCord et al. EUPHYTICA
- Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling
- (2014) R. Tabata et al. SCIENCE
- A Saturated Genetic Linkage Map of Autotetraploid Alfalfa ( Medicago sativa L.) Developed Using Genotyping-by-Sequencing Is Highly Syntenous with the Medicago truncatula Genome
- (2014) Xuehui Li et al. G3-Genes Genomes Genetics
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Coordination of Leaf Photosynthesis, Transpiration, and Structural Traits in Rice and Wild Relatives (Genus Oryza)
- (2013) R. Giuliani et al. PLANT PHYSIOLOGY
- Applied Genetics and Genomics in Alfalfa Breeding
- (2012) Xuehui Li et al. Agronomy-Basel
- Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species
- (2011) J. W. VAN OOIJEN Genetics Research
- From RNA-seq reads to differential expression results
- (2011) Alicia Oshlack et al. GENOME BIOLOGY
- RNA sequencing: advances, challenges and opportunities
- (2010) Fatih Ozsolak et al. NATURE REVIEWS GENETICS
- Increased Leaf Size: Different Means to an End
- (2010) N. Gonzalez et al. PLANT PHYSIOLOGY
- Environmental Effects on Spatial and Temporal Patterns of Leaf and Root Growth
- (2009) Achim Walter et al. Annual Review of Plant Biology
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
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