Combined QTL mapping and RNA-Seq profiling reveals candidate genes associated with cadmium tolerance in barley

Transcriptome response of roots to salt stress in a salinity-tolerant bread wheat cultivar

(2019) Nazanin Amirbakhtiar et al.   PLoS One

Transcriptome Analysis Reveals Cotton (Gossypium hirsutum) Genes That Are Differentially Expressed in Cadmium Stress Tolerance

(2019) Mingge Han et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Cadmium contamination in soils and crops in four mining areas, China

(2018) Ziqi Zhou et al.   JOURNAL OF GEOCHEMICAL EXPLORATION

RNAseq analysis reveals pathways and candidate genes associated with salinity tolerance in a spaceflight-induced wheat mutant

(2017) Hongchun Xiong et al.   Scientific Reports

Transcriptome analysis revealed the drought-responsive genes in Tibetan hulless barley

(2016) Xingquan Zeng et al.   BMC GENOMICS

Microarray Meta-Analysis Focused on the Response of Genes Involved in Redox Homeostasis to Diverse Abiotic Stresses in Rice

(2016) Joao B. de Abreu Neto et al.   Frontiers in Plant Science

Genome-wide association mapping of cadmium accumulation in different organs of barley

(2015) Dezhi Wu et al.   NEW PHYTOLOGIST

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

(2014) Shanrong Zhao et al.   PLoS One

Genome-Wide Transcriptome Analysis Reveals that Cadmium Stress Signaling Controls the Expression of Genes in Drought Stress Signal Pathways in Rice

(2014) Youko Oono et al.   PLoS One

Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance

(2013) Mukesh Jain et al.   PLANT BIOTECHNOLOGY JOURNAL

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Molecular characterization of a rice metal tolerance protein, OsMTP1

(2011) Lianyu Yuan et al.   PLANT CELL REPORTS

Physiological, genetic, and molecular characterization of a high-Cd-accumulating rice cultivar, Jarjan

(2010) Daisei Ueno et al.   JOURNAL OF EXPERIMENTAL BOTANY

The putative Arabidopsis zinc transporter ZTP29 is involved in the response to salt stress

(2010) Miaoying Wang et al.   PLANT MOLECULAR BIOLOGY

Gene limiting cadmium accumulation in rice

(2010) D. Ueno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

A QTL analysis of aluminium tolerance in barley, using gene-based markers

(2009) S. Navakode et al.   CEREAL RESEARCH COMMUNICATIONS

Oxidative stress-related responses at transcriptional and enzymatic levels after exposure to Cd or Cu in a multipollution context

(2009) Karen Smeets et al.   JOURNAL OF PLANT PHYSIOLOGY

A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8

(2009) Fabian Schmidt et al.   MOLECULAR BIOLOGY REPORTS

Comparative analysis of the grain proteome fraction in barley genotypes with contrasting salinity tolerance during germination

(2009) KATJA WITZEL et al.   PLANT CELL AND ENVIRONMENT

Addressing drought tolerance in maize by transcriptional profiling and mapping

(2008) Rosanna Marino et al.   MOLECULAR GENETICS AND GENOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS