Re-engineering of CUP1 promoter and Cup2/Ace1 transactivator to convert Saccharomyces cerevisiae into a whole-cell eukaryotic biosensor capable of detecting 10 nM of bioavailable copper

Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator

(2021) Adrian L Sanborn et al.   eLife

AlphaFold and Implications for Intrinsically Disordered Proteins

(2021) Kiersten M. Ruff et al.   JOURNAL OF MOLECULAR BIOLOGY

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

(2021) Jaime A Castro-Mondragon et al.   NUCLEIC ACIDS RESEARCH

Development of a Sensitive Escherichia coli Bioreporter Without Antibiotic Markers for Detecting Bioavailable Copper in Water Environments

(2020) Yilin Pang et al.   Frontiers in Microbiology

The N-Terminal Tail of Histone H3 Regulates Copper Homeostasis in Saccharomyces cerevisiae

(2020) Sakshi Singh et al.   MOLECULAR AND CELLULAR BIOLOGY

In vivo characterisation of fluorescent proteins in budding yeast

(2019) Dennis Botman et al.   Scientific Reports

An engineered GFP fluorescent bacterial biosensor for detecting and quantifying silver and copper ions

(2019) Adam Radek Martinez et al.   BIOMETALS

ggCyto: Next Generation Open-Source Visualization Software for Cytometry

(2018) Phu Van et al.   BIOINFORMATICS

High‐throughput discovery of functional disordered regions: investigation of transactivation domains

(2018) Charles NJ Ravarani et al.   Molecular Systems Biology

Development of a pigment-based whole-cell biosensor for the analysis of environmental copper

(2017) Pei-Hsuan Chen et al.   RSC Advances

Plant-Derived Transcription Factors for Orthologous Regulation of Gene Expression in the Yeast Saccharomyces cerevisiae

(2017) Gita Naseri et al.   ACS Synthetic Biology

Cofactor squelching: Artifact or fact?

(2016) Søren Fisker Schmidt et al.   BIOESSAYS

EasyClone-MarkerFree: A vector toolkit for marker-less integration of genes intoSaccharomyces cerevisiaevia CRISPR-Cas9

(2016) Mathew M Jessop-Fabre et al.   Biotechnology Journal

Introduction to biosensors

(2016) N. Bhalla et al.   Essays in Biochemistry

mScarlet: a bright monomeric red fluorescent protein for cellular imaging

(2016) Daphne S Bindels et al.   NATURE METHODS

Single molecule tracking of Ace1p inSaccharomyces cerevisiaedefines a characteristic residence time for non-specific interactions of transcription factors with chromatin

(2016) David A. Ball et al.   NUCLEIC ACIDS RESEARCH

EasyClone-MarkerFree: A vector toolkit for marker-less integration of genes intoSaccharomyces cerevisiaevia CRISPR-Cas9

(2016) Mathew M Jessop-Fabre et al.   Biotechnology Journal

Can terminators be used as insulators into yeast synthetic gene circuits?

(2016) Wenjiang Song et al.   Journal of Biological Engineering

The 9aaTAD Transactivation Domains: From Gal4 to p53

(2016) Martin Piskacek et al.   PLoS One

New biosensor for detection of copper ions in water based on immobilized genetically modified yeast cells

(2015) Irena Vopálenská et al.   BIOSENSORS & BIOELECTRONICS

On modelling the global copper mining rates, market supply, copper price and the end of copper reserves

(2014) Harald U. Sverdrup et al.   RESOURCES CONSERVATION AND RECYCLING

Environmental Sensing of Heavy Metals Through Whole Cell Microbial Biosensors: A Synthetic Biology Approach

(2014) Lara Tess Bereza-Malcolm et al.   ACS Synthetic Biology

OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis

(2014) Greg Finak et al.   PLoS Computational Biology

Construction and optimization of a Pseudomonas putida whole-cell bioreporter for detection of bioavailable copper

(2013) Peng-Song Li et al.   BIOTECHNOLOGY LETTERS

A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum

(2013) Nathan C Shaner et al.   NATURE METHODS

Characterization of plasmid burden and copy number inSaccharomyces cerevisiaefor optimization of metabolic engineering applications

(2012) Ashty S. Karim et al.   FEMS YEAST RESEARCH

Using sustainability reporting to assess the environmental footprint of copper mining

(2012) S. Northey et al.   JOURNAL OF CLEANER PRODUCTION

Construction of a bacterial biosensor for zinc and copper and its application to the development of multifunctional heavy metal adsorption bacteria

(2012) Sambandam Ravikumar et al.   PROCESS BIOCHEMISTRY

Analytical strategies for improving the robustness and reproducibility of bioluminescent microbial bioreporters

(2011) Aldo Roda et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Bioavailability and toxicity of copper in soils: Integrating chemical approaches with responses of microbial biosensors

(2011) L. Maderova et al.   SOIL BIOLOGY & BIOCHEMISTRY

Toxicity of nanoparticles of CuO, ZnO and TiO2 to microalgae Pseudokirchneriella subcapitata

(2008) Villem Aruoja et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Microbial reporters of metal bioavailability

(2008) Sagi Magrisso et al.   Microbial Biotechnology