Interlinkages between soil properties and keystone taxa under different tillage practices on the North China Plain

Coexistence patterns of soil methanogens are closely tied to methane generation and community assembly in rice paddies

(2021) Dong Li et al.   Microbiome

Effects of experiment duration on carbon mineralization and accumulation under no-till

(2021) Zheng-Rong Kan et al.   SOIL & TILLAGE RESEARCH

Keystone taxa shared between earthworm gut and soil indigenous microbial communities collaboratively resist chlordane stress

(2021) Guofan Zhu et al.   ENVIRONMENTAL POLLUTION

Conventional and conservation tillage practices affect soil microbial co-occurrence patterns and are associated with crop yields

(2021) Xiaojing Hu et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed

(2020) Hyun Kim et al.   Microbiome

No tillage increases soil organic carbon storage and decreases carbon dioxide emission in the crop residue-returned farming system

(2020) Hao Wang et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Land-use changes alter soil bacterial composition and diversity in tropical forest soil in China

(2020) Yingtao Sun et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Fifteen-year no tillage of a Mollisol with residue retention indirectly affects topsoil bacterial community by altering soil properties

(2020) Meng Li et al.   SOIL & TILLAGE RESEARCH

Shifts in microbial and physicochemical parameters associated with increasing soil quality in a tropical Ultisol under high seasonal variation

(2020) Lucas Dantas Lopes et al.   SOIL & TILLAGE RESEARCH

Influence of tillage based crop establishment and residue management practices on soil quality indices and yield sustainability in rice-wheat cropping system of Eastern Indo-Gangetic Plains

(2020) Kirti Saurabh et al.   SOIL & TILLAGE RESEARCH

Variable sediment methane production in response to different source-associated sewer sediment types and hydrological patterns: Role of the sediment microbiome

(2020) Hao Chen et al.   WATER RESEARCH

Core Microbiota in Agricultural Soils and Their Potential Associations with Nutrient Cycling

(2019) Shuo Jiao et al.   mSystems

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Dynamics and temperature sensitivity of soil organic carbon mineralization under medium-term conservation agriculture as affected by residue and nitrogen management options

(2019) S.L. Jat et al.   SOIL & TILLAGE RESEARCH

Direct and indirect linkages between soil aggregates and soil bacterial communities under tillage methods

(2019) Hao Wang et al.   GEODERMA

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Consumption of N2O and other N-cycle intermediates by Gemmatimonas aurantiaca strain T-27

(2019) Joanne Chee-Sanford et al.   MICROBIOLOGY-SGM

Tillage practices with different soil disturbance shape the rhizosphere bacterial community throughout crop growth

(2019) Ziting Wang et al.   SOIL & TILLAGE RESEARCH

OUP accepted manuscript

(2018)   BIOINFORMATICS

Effects of two ecological earthworm species on atrazine degradation performance and bacterial community structure in red soil

(2018) Zhong Lin et al.   CHEMOSPHERE

Effects of riparian land use changes on soil aggregates and organic carbon

(2018) Jin Qian et al.   ECOLOGICAL ENGINEERING

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Tillage Changes Vertical Distribution of Soil Bacterial and Fungal Communities

(2018) Ruibo Sun et al.   Frontiers in Microbiology

Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

(2018) Xiaobo Liu et al.   Microbiome

Soil health assessment: A critical review of current methodologies and a proposed new approach

(2018) Oshri Rinot et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Co-occurrence patterns of the microbial community in polycyclic aromatic hydrocarbon-contaminated riverine sediments

(2018) Zaisheng Yan et al.   JOURNAL OF HAZARDOUS MATERIALS

Large soil organic carbon increase due to improved agronomic management in the North China Plain from 1980s to 2010s

(2017) Daorui Han et al.   GLOBAL CHANGE BIOLOGY

Trends in Taxonomic and Functional Composition of Soil Microbiome Along a Precipitation Gradient in Israel

(2017) Binu M. Tripathi et al.   MICROBIAL ECOLOGY

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Statistics, Scoring Functions, and Regional Analysis of a Comprehensive Soil Health Database

(2017) Aubrey K. Fine et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Environmental Factors Shape Water Microbial Community Structure and Function in Shrimp Cultural Enclosure Ecosystems

(2017) Dongwei Hou et al.   Frontiers in Microbiology

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Effects of double cropping on summer climate of the North China Plain and neighbouring regions

(2014) Su-Jong Jeong et al.   Nature Climate Change

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns in belowground communities

(2009) Noah Fierer et al.   ECOLOGY LETTERS