Strictly co-isogenic C57BL/6J-Prnp−/−mice: A rigorous resource for prion science

Lack of Neuronal IFN-β-IFNAR Causes Lewy Body- and Parkinson’s Disease-like Dementia

(2015) Patrick Ejlerskov et al.   CELL

Passenger Mutations Confound Interpretation of All Genetically Modified Congenic Mice

(2015) Tom Vanden Berghe et al.   IMMUNITY

Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control

(2015) Irene Gallina et al.   Nature Communications

Involvement of PrPC in kainate-induced excitotoxicity in several mouse strains

(2015) Patricia Carulla et al.   Scientific Reports

An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex

(2014) Y. Zhang et al.   JOURNAL OF NEUROSCIENCE

The prion protein is critical for DNA repair and cell survival after genotoxic stress

(2014) Anne Bravard et al.   NUCLEIC ACIDS RESEARCH

De-regulation of gene expression and alternative splicing affects distinct cellular pathways in the aging hippocampus

(2014) Roman M. Stilling et al.   Frontiers in Cellular Neuroscience

The Role of the NADPH Oxidase NOX2 in Prion Pathogenesis

(2014) Silvia Sorce et al.   PLoS Pathogens

Mouse Genome Engineering Using Designer Nucleases

(2014) Mario Hermann et al.   Jove-Journal of Visualized Experiments

SIRPα polymorphisms, but not the prion protein, control phagocytosis of apoptotic cells

(2013) Mario Nuvolone et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Deciphering the functions and regulation of brain-enriched A-to-I RNA editing

(2013) Jin Billy Li et al.   NATURE NEUROSCIENCE

Lack of influence of prion protein gene expression on kainate-induced seizures in mice: Studies using congenic, coisogenic and transgenic strains

(2013) J.F. Striebel et al.   NEUROSCIENCE

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Detecting differential usage of exons from RNA-seq data

(2012) S. Anders et al.   GENOME RESEARCH

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction

(2012) Erin L. Doyle et al.   NUCLEIC ACIDS RESEARCH

Deregulation of the A-to-I RNA editing mechanism in psychiatric disorders

(2011) Gilad Silberberg et al.   HUMAN MOLECULAR GENETICS

Mouse genomic variation and its effect on phenotypes and gene regulation

(2011) Thomas M. Keane et al.   NATURE

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting

(2011) Tomas Cermak et al.   NUCLEIC ACIDS RESEARCH

Developmental influence of the cellular prion protein on the gene expression profile in mouse hippocampus

(2011) Stefano Benvegnù et al.   PHYSIOLOGICAL GENOMICS

Increased de novo copy number variants in the offspring of older males

(2011) T Flatscher-Bader et al.   Translational Psychiatry

Brain transcriptional stability upon prion protein-encoding gene invalidation in zygotic or adult mouse

(2010) Sead Chadi et al.   BMC GENOMICS

Determination of reference genes for circadian studies in different tissues and mouse strains

(2010) Rok Kosir et al.   BMC MOLECULAR BIOLOGY

Axonal prion protein is required for peripheral myelin maintenance

(2010) Juliane Bremer et al.   NATURE NEUROSCIENCE

A Flanking Gene Problem Leads to the Discovery of a Gprc5b Splice Variant Predominantly Expressed in C57Bl/6J Mouse Brain and in Maturing Neurons

(2010) Bethany H. Cool et al.   PLoS One

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Lymphotoxin-Dependent Prion Replication in Inflammatory Stromal Cells of Granulomas

(2008) Mathias Heikenwalder et al.   IMMUNITY

The POM Monoclonals: A Comprehensive Set of Antibodies to Non-Overlapping Prion Protein Epitopes

(2008) Magdalini Polymenidou et al.   PLoS One