Association genetics and transcriptome analysis reveal a gibberellin-responsive pathway involved in regulating photosynthesis

Gibberellin-induced changes in the transcriptome of grapevine (Vitis labrusca × V. vinifera) cv. Kyoho flowers

(2015) Chenxia Cheng et al.   BMC GENOMICS

Regulation of chloroplast development and function by cytokinin

(2015) Anne Cortleven et al.   JOURNAL OF EXPERIMENTAL BOTANY

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants

(2015) Chi-Nga Chow et al.   NUCLEIC ACIDS RESEARCH

A Nucleus-Encoded Chloroplast Protein Regulated by Iron Availability Governs Expression of the Photosystem I Subunit PsaA inChlamydomonas reinhardtii

(2015) Linnka Lefebvre-Legendre et al.   PLANT PHYSIOLOGY

Variation in growth, leaf, and wood property traits of Chinese white poplar (Populus tomentosa), a major industrial tree species in Northern China

(2014) Qingzhang Du et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Identification of additive, dominant, and epistatic variation conferred by key genes in cellulose biosynthesis pathway in Populus tomentosa

(2014) Q. Du et al.   DNA RESEARCH

Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations ofPopulus trichocarpa

(2014) Athena D. McKown et al.   NEW PHYTOLOGIST

Isolation, phylogenetic relationship and expression profiling of sugar transporter genes in sweet orange (Citrus sinensis)

(2014) Qian-Ming Zheng et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Light-regulated gene repositioning in Arabidopsis

(2014) Chun-Miao Feng et al.   Nature Communications

A new alternative in plant retrograde signaling

(2014) Hou-Sung Jung et al.   GENOME BIOLOGY

The Regulatory Properties of Rubisco Activase Differ among Species and Affect Photosynthetic Induction during Light Transitions

(2013) A. E. Carmo-Silva et al.   PLANT PHYSIOLOGY

Gibberellins and DELLAs: central nodes in growth regulatory networks

(2013) Hannes Claeys et al.   TRENDS IN PLANT SCIENCE

Allelic Variation in a Cellulose Synthase Gene ( PtoCesA4 ) Associated with Growth and Wood Properties in Populus tomentosa

(2013) Qingzhang Du et al.   G3-Genes Genomes Genetics

A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses

(2012) Effie S Mutasa-Göttgens et al.   BMC GENOMICS

Genetic Diversity and Population Structure of Chinese White Poplar (Populus tomentosa) Revealed by SSR Markers

(2012) Qingzhang Du et al.   JOURNAL OF HEREDITY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Polymorphic simple sequence repeat (SSR) loci within cellulose synthase (PtoCesA) genes are associated with growth and wood properties inPopulus tomentosa

(2012) Qingzhang Du et al.   NEW PHYTOLOGIST

Populus trichocarpacell wall chemistry and ultrastructure trait variation, genetic control and genetic correlations

(2012) Ilga Porth et al.   NEW PHYTOLOGIST

Gibberellin indirectly promotes chloroplast biogenesis as a means to maintain the chloroplast population of expanded cells

(2012) Xingshan Jiang et al.   PLANT JOURNAL

Mechanisms of hormonal regulation of endosperm cap-specific gene expression in tomato seeds

(2012) Cristina Martínez-Andújar et al.   PLANT JOURNAL

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

The MYB80 Transcription Factor Is Required for Pollen Development and the Regulation of Tapetal Programmed Cell Death inArabidopsis thaliana

(2011) Huy Anh Phan et al.   PLANT CELL

SCARECROW-LIKE 3 promotes gibberellin signaling by antagonizing master growth repressor DELLA in Arabidopsis

(2011) Zhong-Lin Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysing biological pathways in genome-wide association studies

(2010) Kai Wang et al.   NATURE REVIEWS GENETICS

Gibberellins Regulate Lateral Root Formation in Populus through Interactions with Auxin and Other Hormones

(2010) J. Gou et al.   PLANT CELL

Allele Interaction – Single Locus Genetics Meets Regulatory Biology

(2010) Arne B. Gjuvsland et al.   PLoS One

Stimulation of crop productivity, photosynthesis and artemisinin production in Artemisia annua L. by triacontanol and gibberellic acid application

(2010) Tariq Aftab et al.   Journal of Plant Interactions

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

The Angiosperm Gibberellin-GID1-DELLA Growth Regulatory Mechanism: How an "Inhibitor of an Inhibitor" Enables Flexible Response to Fluctuating Environments

(2009) N. P. Harberd et al.   PLANT CELL

Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies

(2008) Li Ma et al.   BMC BIOINFORMATICS

Gibberellin-induced DELLA recognition by the gibberellin receptor GID1

(2008) Kohji Murase et al.   NATURE

Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems

(2008) Patrick C. Phillips   NATURE REVIEWS GENETICS

Gene expression analysis in citrus reveals the role of gibberellins on photosynthesis and stress

(2008) LAURA HUERTA et al.   PLANT CELL AND ENVIRONMENT

Expansion and Diversification of the Populus R2R3-MYB Family of Transcription Factors

(2008) O. Wilkins et al.   PLANT PHYSIOLOGY

Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast

(2008) A. Roguev et al.   SCIENCE