Regulation of the Cell Cycle, Apoptosis, and Proline Accumulation Plays an Important Role in the Stress Response of the Eastern Oyster Crassostrea Virginica

Contrasting Immunomodulatory Effects of Probiotic and Pathogenic Bacteria on Eastern Oyster, Crassostrea Virginica, Larvae

(2020) Tejashree H. Modak et al.   Vaccines

Peroxisomal dysfunction in neurodegenerative diseases

(2019) Doo Sin Jo et al.   ARCHIVES OF PHARMACAL RESEARCH

Transcriptomic response and hydrocarbon accumulation in the eastern oyster (Crassostrea virginica) exposed to crude oil

(2019) Edgar A. López-Landavery et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Massive expansion and diversity of nicotinic acetylcholine receptors in lophotrochozoans

(2019) Yu Jiao et al.   BMC GENOMICS

Increased mortality of harvested eastern oysters ( Crassostrea virginica ) is associated with air exposure and temperature during a spring fishery in Atlantic Canada

(2018) Jeff C. Clements et al.   FISHERIES RESEARCH

A novel and stress adaptive alternative oxidase derived from alternative splicing of duplicated exon in oyster Crassostrea virginica

(2017) Ming Liu et al.   Scientific Reports

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Infectious diseases of marine molluscs and host responses as revealed by genomic tools

(2016) Ximing Guo et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular Basis for Adaptation of Oysters to Stressful Marine Intertidal Environments

(2016) Guofan Zhang et al.   Annual Review of Animal Biosciences

FMRFamide signaling promotes stress-induced sleep in Drosophila

(2015) Olivia Lenz et al.   BRAIN BEHAVIOR AND IMMUNITY

Developing tools for the study of molluscan immunity: The sequencing of the genome of the eastern oyster, Crassostrea virginica

(2015) Marta Gómez-Chiarri et al.   FISH & SHELLFISH IMMUNOLOGY

OsHV-1 countermeasures to the Pacific oyster's anti-viral response

(2015) Timothy J. Green et al.   FISH & SHELLFISH IMMUNOLOGY

Immune and stress responses in oysters with insights on adaptation

(2015) Ximing Guo et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome analysis reveals strong and complex antiviral response in a mollusc

(2015) Yan He et al.   FISH & SHELLFISH IMMUNOLOGY

Cellular Response upon Stress: p57 Contribution to the Final Outcome

(2015) Marianna Nicoletta Rossi et al.   MEDIATORS OF INFLAMMATION

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Massive expansion and functional divergence of innate immune genes in a protostome

(2015) Linlin Zhang et al.   Scientific Reports

Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica

(2014) Laura E Eierman et al.   BMC GENOMICS

Proteomic Basis of Stress Responses in the Gills of the Pacific Oyster Crassostrea gigas

(2014) Yang Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Transcriptome of American Oysters, Crassostrea virginica, in Response to Bacterial Challenge: Insights into Potential Mechanisms of Disease Resistance

(2014) Ian C. McDowell et al.   PLoS One

TNF and MAP kinase signalling pathways

(2014) Guadalupe Sabio et al.   SEMINARS IN IMMUNOLOGY

Effects of temperature and salinity on metabolic rate of the Asiatic clam Corbicula fluminea (Müller, 1774)

(2014) Bai-cai Xiao et al.   SpringerPlus

The critical role of Sestrin 1 in regulating the proliferation of cardiac fibroblasts

(2013) Gang Sun et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)

(2013) Linlin Zhang et al.   MARINE BIOTECHNOLOGY

Genome and Transcriptome Analyses Provide Insight into the Euryhaline Adaptation Mechanism of Crassostrea gigas

(2013) Jie Meng et al.   PLoS One

Tumor Suppression in the Absence of p53-Mediated Cell-Cycle Arrest, Apoptosis, and Senescence

(2012) Tongyuan Li et al.   CELL

Energy homeostasis as an integrative tool for assessing limits of environmental stress tolerance in aquatic invertebrates

(2012) Inna M. Sokolova et al.   MARINE ENVIRONMENTAL RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Mechanisms of Cell Death in Acute Liver Failure

(2012) Heike Bantel et al.   Frontiers in Physiology

Role of peroxisomes in ROS/RNS-metabolism: Implications for human disease

(2011) Marc Fransen et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Identification and expression of immune genes in the flat oyster Ostrea edulis in response to bonamiosis

(2011) Laura Martín-Gómez et al.   GENE

Peroxisome assembly: matrix and membrane protein biogenesis

(2011) Changle Ma et al.   JOURNAL OF CELL BIOLOGY

Suppressor of Cytokine Signaling 2 Is a Feedback Inhibitor of TLR-Induced Activation in Human Monocyte-Derived Dendritic Cells

(2011) G. Posselt et al.   JOURNAL OF IMMUNOLOGY

Nutrient limitations alter cell division control and chromosome segregation through growth-related kinases and phosphatases

(2011) M. Yanagida et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of cadmium on anaerobic energy metabolism and mRNA expression during air exposure and recovery of an intertidal mollusk Crassostrea virginica

(2010) Anna V. Ivanina et al.   AQUATIC TOXICOLOGY

Peroxisomes Are Signaling Platforms for Antiviral Innate Immunity

(2010) Evelyn Dixit et al.   CELL

Immunosuppressive effects of environmental stressors on immunological function in Pinctada imbricata

(2010) Rhiannon P. Kuchel et al.   FISH & SHELLFISH IMMUNOLOGY

Biochemical changes in oyster tissues and hemolymph during long-term air exposure

(2010) Shinya Kawabe et al.   FISHERIES SCIENCE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

The Biology of Chromatin Remodeling Complexes

(2009) Cedric R. Clapier et al.   Annual Review of Biochemistry

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Modes of p53 Regulation

(2009) Jan-Philipp Kruse et al.   CELL

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

First molluscan TNFR homologue in Zhikong scallop: Molecular characterization and expression analysis

(2009) Ling Li et al.   FISH & SHELLFISH IMMUNOLOGY

Linking DNA methylation and histone modification: patterns and paradigms

(2009) Howard Cedar et al.   NATURE REVIEWS GENETICS

Proline: a multifunctional amino acid

(2009) László Szabados et al.   TRENDS IN PLANT SCIENCE

Proline accumulation in plants: a review

(2008) Nathalie Verbruggen et al.   AMINO ACIDS

First molluscan TNF-α homologue of the TNF superfamily in disk abalone: Molecular characterization and expression analysis

(2008) Mahanama De Zoysa et al.   FISH & SHELLFISH IMMUNOLOGY

Prostaglandin E Receptor Type 4-associated Protein Interacts Directly with NF-κB1 and Attenuates Macrophage Activation

(2008) Manabu Minami et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The effects of intertidal air exposure on the respiratory physiology and the killing activity of hemocytes in the pacific oyster, Crassostrea gigas (Thunberg)

(2008) Steven M. Allen et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

High mobility group protein B1 enhances DNA repair and chromatin modification after DNA damage

(2008) S. S. Lange et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FMRFamide and related peptides in the phylum mollusca

(2007) Estuardo López-Vera et al.   PEPTIDES