Differed Growth Stage Dynamics of Root-Associated Bacterial and Fungal Community Structure Associated with Halophytic Plant Lycium ruthenicum

Mechanism and application of Sesbania root-nodulating bacteria: an alternative for chemical fertilizers and sustainable development

(2021) Kuldeep Singh et al.   ARCHIVES OF MICROBIOLOGY

Insights into the plant responses to drought and decoding the potential of root associated microbiome for inducing drought tolerance

(2021) Piyush Mathur et al.   PHYSIOLOGIA PLANTARUM

Seasonal Changes in Pinus tabuliformis Root-Associated Fungal Microbiota Drive N and P Cycling in Terrestrial Ecosystem

(2021) Hai-Hua Wang et al.   Frontiers in Microbiology

Rhizosphere bacteria containing ACC deaminase decrease root ethylene emission and improve maize root growth with localized nutrient supply

(2021) Kemo Jin et al.   Food and Energy Security

The Banana Root Endophytome: Differences between Mother Plants and Suckers and Evaluation of Selected Bacteria to Control Fusarium oxysporum f.sp. cubense

(2021) Carmen Gómez-Lama Cabanás et al.   Journal of Fungi

Comparative Study of the Rhizosphere and Root Endosphere Microbiomes of Cholistan Desert Plants

(2021) Salma Mukhtar et al.   Frontiers in Microbiology

The hierarchy of root branching order determines bacterial composition, microbial carrying capacity and microbial filtering

(2021) William L. King et al.   Communications Biology

Nitrogen fixation and crop productivity enhancements co‐driven by intercrop root exudates and key rhizosphere bacteria

(2021) Heng‐Yu Hu et al.   JOURNAL OF APPLIED ECOLOGY

Understanding the potential of root microbiome influencing salt‐tolerance in plants and mechanisms involved at the transcriptional and translational level

(2021) Swarnendu Roy et al.   PHYSIOLOGIA PLANTARUM

Investigating the Role of Root Exudates in Recruiting Streptomyces Bacteria to the Arabidopsis thaliana Microbiome

(2021) Sarah F. Worsley et al.   Frontiers in Molecular Biosciences

Drought Influences Fungal Community Dynamics in the Grapevine Rhizosphere and Root Microbiome

(2021) María Julia Carbone et al.   Journal of Fungi

Changes in the root-associated bacteria of sorghum are driven by the combined effects of salt and sorghum development

(2021) Gao Yukun et al.   Environmental Microbiome

Isolation and characterization of cassava root endophytic bacteria with the ability to promote plant growth and control the in vitro and in vivo growth of Phytopythium sp.

(2021) Solange da Cunha Ferreira et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Rhizosphere Microbiome Assembly and Its Impact on Plant Growth

(2020) Qian Qu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

An extended root phenotype: the rhizosphere, its formation and impacts on plant fitness

(2020) Carla de la Fuente Cantó et al.   PLANT JOURNAL

Streptomyces Endophytes Promote Host Health and Enhance Growth across Plant Species

(2020) Sarah F. Worsley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Seasonal Variation in the Rhizosphere and Non-Rhizosphere Microbial Community Structures and Functions of Camellia yuhsienensis Hu

(2020) Jun Li et al.   Microorganisms

Root exudates: from plant to rhizosphere and beyond

(2019) Vicente Vives-Peris et al.   PLANT CELL REPORTS

Effect of co-application of phosphorus fertilizer and in vitro-produced mycorrhizal fungal inoculants on yield and leaf nutrient concentration of cassava

(2019) Ibrahim A. Aliyu et al.   PLoS One

Biocontrol of Cereal Crop Diseases Using Streptomycetes

(2019) Jake T. Newitt et al.   Pathogens

Composition of the arbuscular mycorrhizal fungal community and changes in diversity of the rhizosphere of Clematis fruticosa over three seasons across different elevations

(2019) M. Liu et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Are Trechisporales ectomycorrhizal or non-mycorrhizal root endophytes?

(2019) Mary Luz Vanegas-León et al.   MYCOLOGICAL PROGRESS

Plant root exudation under drought: implications for ecosystem functioning

(2019) Alex Williams et al.   NEW PHYTOLOGIST

Fire Phoenix facilitates phytoremediation of PAH-Cd co-contaminated soil through promotion of beneficial rhizosphere bacterial communities

(2019) Yuanyuan Dai et al.   ENVIRONMENT INTERNATIONAL

Soil Fertility Improvement by Litter Decomposition and Inoculation with the Fungus Mortierella sp. in Avocado Plantations of Colombia

(2018) Álvaro Tamayo-Vélez et al.   COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS

Temporal shifts of fungal communities in the rhizosphere and on tubers in potato fields

(2018) Josephine Zimudzi et al.   Fungal Biology

Actinophytocola glycyrrhizae sp. nov. isolated from the rhizosphere of Glycyrrhiza inflata

(2018) Chengliang Cao et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Mortierella elongata 's roles in organic agriculture and crop growth promotion in a mineral soil

(2018) Fang Li et al.   LAND DEGRADATION & DEVELOPMENT

Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice

(2018) Joseph A. Edwards et al.   PLOS BIOLOGY

Drought Stress and Root-Associated Bacterial Communities

(2018) Dan Naylor et al.   Frontiers in Plant Science

Temporal dynamics and compartment specific rice straw degradation in bulk soil and the rhizosphere of maize

(2018) Sarah A. Maarastawi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Diversity and composition of bacterial endophytes among plant parts of Panax notoginseng

(2018) Linlin Dong et al.   Chinese Medicine

Species-Associated Differences in the Below-Ground Microbiomes of Wild and Domesticated Setaria

(2018) Srinivasa Chaluvadi et al.   Frontiers in Plant Science

The structure and function of the global citrus rhizosphere microbiome

(2018) Jin Xu et al.   Nature Communications

Actinophytocola xanthii sp. nov., an actinomycete isolated from rhizosphere soil of the plant Xanthium sibiricum

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Disease Suppressive Soils: New Insights from the Soil Microbiome

(2017) Daniel Schlatter et al.   PHYTOPATHOLOGY

Seasonal induced changes in spinach rhizosphere microbial community structure with varying salinity and drought

(2017) A. Mark Ibekwe et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Let the Core Microbiota Be Functional

(2017) Philippe Lemanceau et al.   TRENDS IN PLANT SCIENCE

Phytohormones and Beneficial Microbes: Essential Components for Plants to Balance Stress and Fitness

(2017) Dilfuza Egamberdieva et al.   Frontiers in Microbiology

Soil and seasons affect arbuscular mycorrhizal fungi associated with Tamarix rhizosphere in arid and semi-arid steppes

(2016) Karima Bencherif et al.   APPLIED SOIL ECOLOGY

Acidobacteria strains from subdivision 1 act as plant growth-promoting bacteria

(2016) Anna M. Kielak et al.   ARCHIVES OF MICROBIOLOGY

Effects of seasonal variations on soil microbial community composition of two typical zonal vegetation types in the Wuyi Mountains

(2016) Ze-yan Wu et al.   Journal of Mountain Science

Dry Season Constrains Bacterial Phylogenetic Diversity in a Semi-Arid Rhizosphere System

(2016) Rodrigo Gouvêa Taketani et al.   MICROBIAL ECOLOGY

Impact of Soil Salinity on the Structure of the Bacterial Endophytic Community Identified from the Roots of Caliph Medic (Medicago truncatula)

(2016) Mahmoud W. Yaish et al.   PLoS One

Cross-species comparisons of host genetic associations with the microbiome

(2016) Julia K. Goodrich et al.   SCIENCE

The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity

(2016) Citlali Fonseca-García et al.   Frontiers in Microbiology

Salinity altered root distribution and increased diversity of bacterial communities in the rhizosphere soil of Jerusalem artichoke

(2016) Hui Yang et al.   Scientific Reports

Nocardioides antarcticus sp. nov., isolated from marine sediment

(2015) Sangsang Deng et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of traffic-related metals and the effects of different environments on their enrichment in roadside soils along the Qinghai–Tibet highway

(2015) Hua Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Reduced dependence of rhizosphere microbiome on plant-derived carbon in 32-year long-term inorganic and organic fertilized soils

(2015) Chao Ai et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cultivation-Based and Molecular Assessment of Bacterial Diversity in the Rhizosheath of Wheat under Different Crop Rotations

(2015) Muhammad Tahir et al.   PLoS One

Pyrosequencing assessment of rhizosphere fungal communities from a soybean field

(2014) Akifumi Sugiyama et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Genomic comparison of chitinolytic enzyme systems from terrestrial and aquatic bacteria

(2014) Yani Bai et al.   ENVIRONMENTAL MICROBIOLOGY

Diazotrophic potential among bacterial communities associated with wild and cultivatedAgavespecies

(2014) Damaris Desgarennes et al.   FEMS MICROBIOLOGY ECOLOGY

Nutrient transfer in plant–fungal symbioses

(2014) Scott W. Behie et al.   TRENDS IN PLANT SCIENCE

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume

(2013) Meng Li et al.   ENVIRONMENTAL MICROBIOLOGY

Correction: Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions

(2013) Jacqueline M. Chaparro et al.   PLoS One

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

(2013) K. Schlaeppi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The seasonal pattern of soil microbial community structure in mesic low arctic tundra

(2013) Kate M. Buckeridge et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of cross host species inoculation of nitrogen-fixing endophytes on growth and leaf physiology of maize

(2012) Jenny L. Knoth et al.   Global Change Biology Bioenergy

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Interactions between arbuscular mycorrhizal fungi and phosphate-solubilizing fungus (Mortierella sp.) and their effects on Kostelelzkya virginica growth and enzyme activities of rhizosphere and bulk soils at different salinities

(2011) Huanshi Zhang et al.   BIOLOGY AND FERTILITY OF SOILS

Hormonal Regulation of Lateral Root Development in Arabidopsis Modulated by MIZ1 and Requirement of GNOM Activity for MIZ1 Function

(2011) T. Moriwaki et al.   PLANT PHYSIOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nocardioides humi sp. nov., a  -glucosidase-producing bacterium isolated from soil of a ginseng field

(2009) M. K. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis

(2009) T. Umezawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant-Associated Bacterial Degradation of Toxic Organic Compounds in Soil

(2009) Martina McGuinness et al.   International Journal of Environmental Research and Public Health

Gibberellin production and phosphate solubilization by newly isolated strain of Acinetobacter calcoaceticus and its effect on plant growth

(2008) Sang-Mo Kang et al.   BIOTECHNOLOGY LETTERS

Chemistry and weak antimicrobial activities of phomopsins produced by mangrove endophytic fungus Phomopsis sp. ZSU-H76

(2008) Zhongjing Huang et al.   PHYTOCHEMISTRY