Full-length 16S rRNA amplicon sequencing reveals the variation of epibiotic microbiota associated with two shrimp species of Alvinocarididae: possibly co-determined by environmental heterogeneity and specific recognition of hosts

In situ detection of the fine scale heterogeneity of active cold seep environment of the Formosa Ridge, the South China Sea

(2021) Lei Cao et al.   JOURNAL OF MARINE SYSTEMS

Diversity and characterization of bacterial communities of five co‐occurring species at a hydrothermal vent on the Tonga Arc

(2021) Won‐Kyung Lee et al.   Ecology and Evolution

Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria

(2021) Marie-Anne Cambon-Bonavita et al.   Microbiome

Life in the Dark: Phylogenetic and Physiological Diversity of Chemosynthetic Symbioses

(2021) E. Maggie Sogin et al.   Annual Review of Microbiology

Taxonomic profiling of Symbiodiniaceae and bacterial communities associated with Indo-Pacific corals in the Gulf of Thailand using PacBio sequencing of full-length ITS and 16S rRNA genes

(2021) Wirulda Pootakham et al.   GENOMICS

Compartmentation of microbial communities in structure and function for methane oxidation coupled to nitrification–denitrification

(2021) Qin Cao et al.   BIORESOURCE TECHNOLOGY

Insights into the strategy of micro-environmental adaptation: Transcriptomic analysis of two alvinocaridid shrimps at a hydrothermal vent

(2020) Fang-Chao Zhu et al.   PLoS One

High-Throughput Sequencing Reveals a Potentially Novel Sulfurovum Species Dominating the Microbial Communities of the Seawater–Sediment Interface of a Deep-Sea Cold Seep in South China Sea

(2020) Qing-Lei Sun et al.   Microorganisms

Evidence of Vent-Adaptation in Sponges Living at the Periphery of Hydrothermal Vent Environments: Ecological and Evolutionary Implications

(2020) Magdalena N. Georgieva et al.   Frontiers in Microbiology

Rimicaris exoculata: biology and ecology of a shrimp from deep-sea hydrothermal vents associated with ectosymbiotic bacteria

(2020) M Zbinden et al.   MARINE ECOLOGY PROGRESS SERIES

Anaerobic oxidation of methane and associated microbiome in anoxic water of Northwestern Siberian lakes

(2020) Léa Cabrol et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metatranscriptomics by In Situ RNA Stabilization Directly and Comprehensively Revealed Episymbiotic Microbial Communities of Deep-Sea Squat Lobsters

(2020) Kaori Motoki et al.   mSystems

Taxonomy and diversity of bacterial communities associated with marine sediments from Chilean salmonid farms

(2020) Richard M. Miranda et al.   AQUACULTURE RESEARCH

Bacterial communities associated with Shinkaia crosnieri from the Iheya North, Okinawa Trough: Microbial diversity and metabolic potentials

(2018) Jian Zhang et al.   JOURNAL OF MARINE SYSTEMS

Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)

(2018) David W. Waite et al.   Frontiers in Microbiology

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

Gill chamber and gut microbial communities of the hydrothermal shrimp Rimicaris chacei Williams and Rona 1986: A possible symbiosis

(2018) Vincent Apremont et al.   PLoS One

Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents

(2017) Dimitri V Meier et al.   ISME Journal

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Anaerobic oxidation of methane by aerobic methanotrophs in sub-Arctic lake sediments

(2017) Karla Martinez-Cruz et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Complete genome sequence of the sulfur-oxidizing chemolithoautotrophic Sulfurovum lithotrophicum 42BKTT

(2017) Wooyoung Jeon et al.   Standards in Genomic Sciences

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)

(2017) David W. Waite et al.   Frontiers in Microbiology

Genome Reduction and Microbe-Host Interactions Drive Adaptation of a Sulfur-Oxidizing Bacterium Associated with a Cold Seep Sponge

(2017) Ren-Mao Tian et al.   mSystems

High resolution profiling of coral-associated bacterial communities using full-length 16S rRNA sequence data from PacBio SMRT sequencing system

(2017) Wirulda Pootakham et al.   Scientific Reports

Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis

(2016) Ruby Ponnudurai et al.   ISME Journal

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system

(2016) Patrick D. Schloss et al.   PeerJ

Origins and Evolutionary Flexibility of Chemosynthetic Symbionts From Deep-Sea Animals

(2016) Jillian M. Petersen et al.   BIOLOGICAL BULLETIN

First Comparative Analysis of the Community Structures and Carbon Metabolic Pathways of the Bacteria Associated with Alvinocaris longirostris in a Hydrothermal Vent of Okinawa Trough

(2016) Qing-lei Sun et al.   PLoS One

Biofixation of a high-concentration of carbon dioxide using a deep-sea bacterium: Sulfurovum lithotrophicum 42BKTT

(2015) Hyuk-Sung Kwon et al.   RSC Advances

The gill chamber epibiosis of deep-sea shrimpRimicarisexoculata: an in-depth metagenomic investigation and discovery ofZetaproteobacteria

(2014) Cyrielle Jan et al.   ENVIRONMENTAL MICROBIOLOGY

Sulfurovum aggregans sp. nov., a hydrogen-oxidizing, thiosulfate-reducing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent chimney, and an emended description of the genus Sulfurovum

(2014) S. Mino et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Comparative analysis of symbiont ratios and gene expression in natural populations of two Bathymodiolus mussel species

(2014) H. Guezi et al.   SYMBIOSIS

Linking regional variation of epibiotic bacterial diversity and trophic ecology in a new species of Kiwaidae (Decapoda, Anomura) from East Scotia Ridge (Antarctica) hydrothermal vents

(2014) Katrin Zwirglmaier et al.   MicrobiologyOpen

An authoritative global database for active submarine hydrothermal vent fields

(2013) Stace E. Beaulieu et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Free-living bacterial communities associated with tubeworm (Ridgeia piscesae) aggregations in contrasting diffuse flow hydrothermal vent habitats at the Main Endeavour Field, Juan de Fuca Ridge

(2013) Nathalie L. Forget et al.   MicrobiologyOpen

Methylophaga nitratireducenticrescens sp. nov. and Methylophaga frappieri sp. nov., isolated from the biofilm of the methanol-fed denitrification system treating the seawater at the Montreal Biodome

(2012) C. Villeneuve et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Inorganic carbon fixation by chemosynthetic ectosymbionts and nutritional transfers to the hydrothermal vent host-shrimp Rimicaris exoculata

(2012) Julie Ponsard et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata

(2011) Mathieu Guri et al.   ISME Journal

Hydrogen is an energy source for hydrothermal vent symbioses

(2011) Jillian M. Petersen et al.   NATURE

Pathways of Carbon and Energy Metabolism of the Epibiotic Community Associated with the Deep-Sea Hydrothermal Vent Shrimp Rimicaris exoculata

(2011) Michael Hügler et al.   PLoS One

Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones

(2011) J. Grote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean

(2010) Michael Hügler et al.   Annual Review of Marine Science

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Indigenous ectosymbiotic bacteria associated with diverse hydrothermal vent invertebrates

(2010) Shana K. Goffredi   Environmental Microbiology Reports

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dual symbiosis of the vent shrimpRimicaris exoculatawith filamentous gamma- and epsilonproteobacteria at four Mid-Atlantic Ridge hydrothermal vent fields

(2009) Jillian M. Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Isotopic signatures (δ18O and δ13C) of bivalve shells from cold seeps and hydrothermal vents

(2009) Cécile Lietard et al.   GEOBIOS

Notes on the characterization of prokaryote strains for taxonomic purposes

(2009) B. J. Tindall et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Molecular investigations of the stalked barnacle Vulcanolepas osheai and the epibiotic bacteria from the Brothers Caldera, Kermadec Arc, New Zealand

(2009) Yohey Suzuki et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

Hydrothermal venting at pressure-temperature conditions above the critical point of seawater, 5°S on the Mid-Atlantic Ridge

(2008) Andrea Koschinsky et al.   GEOLOGY

Unusual novel n-4 polyunsaturated fatty acids in cold-seep mussels (Bathymodiolus japonicus and Bathymodiolus platifrons), originating from symbiotic methanotrophic bacteria

(2008) Hiroaki Saito   JOURNAL OF CHROMATOGRAPHY A

New insigths on the metabolic diversity among the epibiotic microbial communitiy of the hydrothermal shrimp Rimicaris exoculata

(2008) Magali Zbinden et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Colonization of Sulfurovum sp. on the gill surfaces of Alvinocaris longirostris, a deep-sea hydrothermal vent shrimp

(2008) Gaku Tokuda et al.   Marine Ecology-An Evolutionary Perspective

Symbiotic diversity in marine animals: the art of harnessing chemosynthesis

(2008) Nicole Dubilier et al.   NATURE REVIEWS MICROBIOLOGY

Bacterial symbionts and mineral deposits in the branchial chamber of the hydrothermal vent shrimp Rimicaris exoculata: relationship to moult cycle

(2007) L Corbari et al.   Aquatic Biology