Taxonomy and diversity of bacterial communities associated with marine sediments from Chilean salmonid farms

Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities

(2020) Katy Hoffmann et al.   ISME Journal

Biochemical and Genomic Characterization of the Cypermethrin-Degrading and Biosurfactant-Producing Bacterial Strains Isolated from Marine Sediments of the Chilean Northern Patagonia

(2020) Patricia Aguila-Torres et al.   Marine Drugs

Quantifying population-specific growth in benthic bacterial communities under low oxygen using H218O

(2019) Ömer K. Coskun et al.   ISME Journal

Environmental issues in Chilean salmon farming: a review

(2019) Renato A. Quiñones et al.   Reviews in Aquaculture

The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions

(2019) Marion Pohlner et al.   Frontiers in Microbiology

The Biogeochemical Sulfur Cycle of Marine Sediments

(2019) Bo Barker Jørgensen et al.   Frontiers in Microbiology

Impacts of cage fish farms in a large reservoir on water and sediment chemistry

(2019) Memet Varol   ENVIRONMENTAL POLLUTION

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

(2019) Marina García-López et al.   Frontiers in Microbiology

The study of structure of anaerobic granules and methane producing pathways of pilot-scale UASB reactors treating municipal wastewater under sub-mesophilic conditions

(2019) Isaac Owusu-Agyeman et al.   BIORESOURCE TECHNOLOGY

Oxygen modulates bacterial community composition in the coastal upwelling waters off central Chile

(2018) Montserrat Aldunate et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

The Life Aquatic at the Microscale

(2018) Jean-Baptiste Raina   mSystems

Microbial organic matter degradation potential in Baltic Sea sediments influenced by depositional conditions and in situ geochemistry

(2018) Laura A. Zinke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The life sulfuric: microbial ecology of sulfur cycling in marine sediments

(2017) Kenneth Wasmund et al.   Environmental Microbiology Reports

Complete genome sequence of the sulfur-oxidizing chemolithoautotrophic Sulfurovum lithotrophicum 42BKTT

(2017) Wooyoung Jeon et al.   Standards in Genomic Sciences

Cable Bacteria and the Bioelectrochemical Snorkel: The Natural and Engineered Facets Playing a Role in Hydrocarbons Degradation in Marine Sediments

(2017) Bruna Matturro et al.   Frontiers in Microbiology

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)

(2017) David W. Waite et al.   Frontiers in Microbiology

Public Perceptions of Aquaculture: Evaluating Spatiotemporal Patterns of Sentiment around the World

(2017) Halley E. Froehlich et al.   PLoS One

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments

(2016) Stefan Dyksma et al.   ISME Journal

Rethinking Sediment Biogeochemistry After the Discovery of Electric Currents

(2015) Lars Peter Nielsen et al.   Annual Review of Marine Science

Cable Bacteria in Freshwater Sediments

(2015) Nils Risgaard-Petersen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sulphur-cycling bacteria and ciliated protozoans in a Beggiatoaceae mat covering organically enriched sediments beneath a salmon farm in a southern Chilean fjord

(2015) Carlos P. Aranda et al.   MARINE POLLUTION BULLETIN

Microbial diversity in the deep-sea sediments of Iheya North and Iheya Ridge, Okinawa Trough

(2015) Jian Zhang et al.   MICROBIOLOGICAL RESEARCH

jvenn: an interactive Venn diagram viewer

(2014) Philippe Bardou et al.   BMC BIOINFORMATICS

Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor

(2014) Sairah Y Malkin et al.   ISME Journal

Electric coupling between distant nitrate reduction and sulfide oxidation in marine sediment

(2014) Ugo Marzocchi et al.   ISME Journal

16S rRNA gene-based molecular analysis of mat-forming and accompanying bacteria covering organically-enriched marine sediments underlying a salmon farm in Southern Chile (Calbuco Island)

(2013) Carlos Aranda et al.   GAYANA

Filamentous bacteria transport electrons over centimetre distances

(2012) Christian Pfeffer et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Impacts of marine aquaculture at large spatial scales: Evidences from N and P catchment loading and phytoplankton biomass

(2011) G. Sarà et al.   MARINE ENVIRONMENTAL RESEARCH

Carbon cycling in a zero-discharge mariculture system

(2011) Kenneth Schneider et al.   WATER RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Environmental issues of fish farming in offshore waters: perspectives, concerns and research needs

(2010) M Holmer   Aquaculture Environment Interactions

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Fish-farm impact on metazoan meiofauna in the Mediterranean Sea: Analysis of regional vs. habitat effects

(2009) Simone Mirto et al.   MARINE ENVIRONMENTAL RESEARCH

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Comparison of bacterial communities in fish farm sediments along an organic enrichment gradient

(2008) Naoki Kawahara et al.   AQUACULTURE

Effects of fish farm waste on Posidonia oceanica meadows: Synthesis and provision of monitoring and management tools

(2008) Marianne Holmer et al.   MARINE POLLUTION BULLETIN