Spatially coherent diffusion of human RNA Pol II depends on transcriptional state rather than chromatin motion

Spatial organization of transcribed eukaryotic genes

(2022) Susanne Leidescher et al.   NATURE CELL BIOLOGY

RNA polymerase II transcription compartments: from multivalent chromatin binding to liquid droplet formation?

(2021) Karsten Rippe et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Live-cell imaging reveals the spatiotemporal organization of endogenous RNA polymerase II phosphorylation at a single gene

(2021) Linda S. Forero-Quintero et al.   Nature Communications

Spatial organization of chromosomes leads to heterogeneous chromatin motion and drives the liquid- or gel-like dynamical behavior of chromatin

(2021) Hossein Salari et al.   GENOME RESEARCH

Super resolution microscopy reveals how elongating RNA polymerase II and nascent RNA interact with nucleosome clutches

(2021) Alvaro Castells-Garcia et al.   NUCLEIC ACIDS RESEARCH

Predicting genome organisation and function with mechanistic modelling

(2021) Michael Chiang et al.   TRENDS IN GENETICS

Monitoring the spatio-temporal organization and dynamics of the genome

(2020) Haitham A Shaban et al.   NUCLEIC ACIDS RESEARCH

Structure and mechanism of the RNA polymerase II transcription machinery

(2020) Allison C. Schier et al.   GENES & DEVELOPMENT

Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields

(2020) Andrews Akwasi Agbleke et al.   MOLECULAR CELL

Coupling chromatin structure and dynamics by live super-resolution imaging

(2020) R. Barth et al.   Science Advances

Chromatin arranges in chains of mesoscale domains with nanoscale functional topography independent of cohesin

(2020) Ezequiel Miron et al.   Science Advances

Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II

(2019) Ryosuke Nagashima et al.   JOURNAL OF CELL BIOLOGY

Formation of correlated chromatin domains at nanoscale dynamic resolution during transcription

(2018) Haitham A Shaban et al.   NUCLEIC ACIDS RESEARCH

Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes

(2018) Michele Di Pierro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Live-cell analysis of endogenous GFP-RPB1 uncovers rapid turnover of initiating and promoter-paused RNA Polymerase II

(2018) Barbara Steurer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coactivator condensation at super-enhancers links phase separation and gene control

(2018) Benjamin R. Sabari et al.   SCIENCE

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates

(2018) Won-Ki Cho et al.   SCIENCE

Transcription Factories: Genome Organization and Gene Regulation

(2013) Argyris Papantonis et al.   CHEMICAL REVIEWS

In vivo live imaging of RNA polymerase II transcription factories in primary cells

(2013) A. Ghamari et al.   GENES & DEVELOPMENT

A Quantitative Analysis of Current Practices in Optical Flow Estimation and the Principles Behind Them

(2013) Deqing Sun et al.   INTERNATIONAL JOURNAL OF COMPUTER VISION

Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization

(2013) C. A. Brackley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Real-Time Dynamics of RNA Polymerase II Clustering in Live Human Cells

(2013) I. I. Cisse et al.   SCIENCE

Topoisomerase IIα promotes activation of RNA polymerase I transcription by facilitating pre-initiation complex formation

(2013) Swagat Ray et al.   Nature Communications

A wave of nascent transcription on activated human genes

(2009) Y. Wada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription factories are nuclear subcompartments that remain in the absence of transcription

(2008) J. A. Mitchell et al.   GENES & DEVELOPMENT