A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies
Published 2022 View Full Article
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Title
A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies
Authors
Keywords
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Journal
Nature Communications
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-07-02
DOI
10.1038/s41467-022-31517-8
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- (2019) Zheng Xu et al. Emerging Microbes & Infections
- Pertactin-deficient Bordetella pertussis isolates: evidence of increased circulation in Europe, 1998 to 2015
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- (2019) Bodo Linz et al. CURRENT OPINION IN INFECTIOUS DISEASES
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- Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens
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- GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
- (2018) Zhemin Zhou et al. GENOME RESEARCH
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species
- (2016) Bodo Linz et al. BMC GENOMICS
- Identification and taxonomic characterization of Bordetella pseudohinzii sp. nov. isolated from laboratory-raised mice
- (2016) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Bordetella bronchialis sp. nov., Bordetella flabilis sp. nov. and Bordetella sputigena sp. nov., isolated from human respiratory specimens, and reclassification of Achromobacter sediminum Zhang et al. 2014 as Verticia sediminum gen. nov., comb. nov.
- (2015) Peter A. Vandamme et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Novel environmental species isolated from the plaster wall surface of mural paintings in the Takamatsuzuka tumulus: Bordetella muralis sp. nov., Bordetella tumulicola sp. nov. and Bordetella tumbae sp. nov.
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- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
- (2014) Nicholas J. Croucher et al. NUCLEIC ACIDS RESEARCH
- Global Population Structure and Evolution of Bordetella pertussis and Their Relationship with Vaccination
- (2014) M. J. Bart et al. mBio
- AlienTrimmer: A tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads
- (2013) Alexis Criscuolo et al. GENOMICS
- A Simplified Sequence-Based Identification Scheme for Bordetella Reveals Several Putative Novel Species
- (2013) T. Spilker et al. JOURNAL OF CLINICAL MICROBIOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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- MLST revisited: the gene-by-gene approach to bacterial genomics
- (2013) Martin C. J. Maiden et al. NATURE REVIEWS MICROBIOLOGY
- Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data
- (2012) Yongchao Liu et al. BIOINFORMATICS
- Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens
- (2012) Jihye Park et al. BMC GENOMICS
- Phenotypic and Genomic Analysis of Hypervirulent Human-associated Bordetella bronchiseptica
- (2012) Umesh Ahuja et al. BMC MICROBIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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- FLASH: fast length adjustment of short reads to improve genome assemblies
- (2011) T. Magoc et al. BIOINFORMATICS
- BIGSdb: Scalable analysis of bacterial genome variation at the population level
- (2011) Keith A Jolley et al. BMC BIOINFORMATICS
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- (2011) Maria Anisimova et al. SYSTEMATIC BIOLOGY
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- (2009) A. M. Buboltz et al. INFECTION AND IMMUNITY
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- Replacement of Adenylate Cyclase Toxin in a Lineage of Bordetella bronchiseptica
- (2008) A. M. Buboltz et al. JOURNAL OF BACTERIOLOGY
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