The evolutionary patterns of barley pericentromeric chromosome regions, as shaped by linkage disequilibrium and domestication

Counting on Crossovers: Controlled Recombination for Plant Breeding

(2020) Ella Taagen et al.   TRENDS IN PLANT SCIENCE

Assessing the variation in manganese use efficiency traits in Scottish barley landrace Bere (Hordeum vulgare L.)

(2020) Jonathan E Cope et al.   ANNALS OF BOTANY

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

(2019) Alexey M Kozlov et al.   BIOINFORMATICS

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Exome sequences and multi‐environment field trials elucidate the genetic basis of adaptation in barley

(2019) Daniela Bustos‐Korts et al.   PLANT JOURNAL

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

(2019) Diego Darriba et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic dissection of grain elements predicted by hyperspectral imaging associated with yield-related traits in a wild barley NAM population

(2019) Paul Herzig et al.   PLANT SCIENCE

Environmental Association Identifies Candidates for Tolerance to Low Temperature and Drought

(2019) Li Lei et al.   G3-Genes Genomes Genetics

The Fate of Deleterious Variants in a Barley Genomic Prediction Population

(2019) Thomas J. Y. Kono et al.   GENETICS

Elevated Proportions of Deleterious Genetic Variation in Domestic Animals and Plants

(2018) Takashi Makino et al.   Genome Biology and Evolution

Targeted resequencing reveals genomic signatures of barley domestication

(2018) Artem Pankin et al.   NEW PHYTOLOGIST

Deleterious variants in Asian rice and the potential cost of domestication

(2017) Qingpo Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plant science: Genomic compartments in barley

(2017) Beat Keller et al.   NATURE

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

A Genome Wide Association Study of arabinoxylan content in 2-row spring barley grain

(2017) Ali Saleh Hassan et al.   PLoS One

The iSelect 9 K SNP analysis revealed polyploidization induced revolutionary changes and intense human selection causing strong haplotype blocks in wheat

(2017) Chenyang Hao et al.   Scientific Reports

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

(2017) Sebastian Beier et al.   Scientific Data

The Role of Deleterious Substitutions in Crop Genomes

(2016) Thomas J. Y. Kono et al.   MOLECULAR BIOLOGY AND EVOLUTION

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation

(2016) Joanne Russell et al.   NATURE GENETICS

Barley: a translational model for adaptation to climate change

(2015) Ian K. Dawson et al.   NEW PHYTOLOGIST

The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression

(2014) Katie Baker et al.   PLANT JOURNAL

Structural and functional partitioning of bread wheat chromosome 3B

(2014) F. Choulet et al.   SCIENCE

Two Genomic Regions Contribute Disproportionately to Geographic Differentiation in Wild Barley

(2014) Zhou Fang et al.   G3-Genes Genomes Genetics

STRUCTURE PLOT: a program for drawing elegant STRUCTURE bar plots in user friendly interface

(2014) Ramesh Ramasamy et al.   SpringerPlus

Resequencing Data Indicate a Modest Effect of Domestication on Diversity in Barley: A Cultigen With Multiple Origins

(2013) Peter L. Morrell et al.   JOURNAL OF HEREDITY

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize

(2012) Zhou Fang et al.   GENETICS

A physical, genetic and functional sequence assembly of the barley genome

(2012)   NATURE

Predicting the Functional Effect of Amino Acid Substitutions and Indels

(2012) Yongwook Choi et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A First-Generation Haplotype Map of Maize

(2009) M. A. Gore et al.   SCIENCE

Cereal breeding takes a walk on the wild side

(2007) Catherine Feuillet et al.   TRENDS IN GENETICS