Environmental Association Identifies Candidates for Tolerance to Low Temperature and Drought

Genetic association with high-resolution climate data reveals selection footprints in the genomes of barley landraces across the Iberian Peninsula

(2019) Bruno Contreras-Moreira et al.   MOLECULAR ECOLOGY

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Barley (Hordeum vulgare) circadian clock genes can respond rapidly to temperature in anEARLY FLOWERING 3-dependent manner

(2016) Brett Ford et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Role of Deleterious Substitutions in Crop Genomes

(2016) Thomas J. Y. Kono et al.   MOLECULAR BIOLOGY AND EVOLUTION

angsd-wrapper: utilities for analysing next-generation sequencing data

(2016) Arun Durvasula et al.   Molecular Ecology Resources

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation

(2016) Joanne Russell et al.   NATURE GENETICS

Overexpression of the Wheat Expansin Gene TaEXPA2 Improved Seed Production and Drought Tolerance in Transgenic Tobacco Plants

(2016) Yanhui Chen et al.   PLoS One

Adaptive divergence in the monkey flower Mimulus guttatus is maintained by a chromosomal inversion

(2015) Alex D. Twyford et al.   EVOLUTION

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Barley: a translational model for adaptation to climate change

(2015) Ian K. Dawson et al.   NEW PHYTOLOGIST

Genomic variation across landscapes: insights and applications

(2015) Jason G. Bragg et al.   NEW PHYTOLOGIST

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

(2015) María Muñoz-Amatriaín et al.   PLANT JOURNAL

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Genomic Signature of Adaptation to Climate inMedicago truncatula

(2014) Jeremy B. Yoder et al.   GENETICS

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

EARLY FLOWERING3 Regulates Flowering in Spring Barley by Mediating Gibberellin Production and FLOWERING LOCUS T Expression

(2014) S. A. Boden et al.   PLANT CELL

The USDA Barley Core Collection: Genetic Diversity, Population Structure, and Potential for Genome-Wide Association Studies

(2014) María Muñoz-Amatriaín et al.   PLoS One

High-Throughput Phenotyping to Detect Drought Tolerance QTL in Wild Barley Introgression Lines

(2014) Nora Honsdorf et al.   PLoS One

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.)

(2013) Andrea Visioni et al.   BMC GENOMICS

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Complex Patterns of Local Adaptation in Teosinte

(2013) Tanja Pyhäjärvi et al.   Genome Biology and Evolution

Estimating and interpreting FST: The impact of rare variants

(2013) G. Bhatia et al.   GENOME RESEARCH

Resequencing Data Indicate a Modest Effect of Domestication on Diversity in Barley: A Cultigen With Multiple Origins

(2013) Peter L. Morrell et al.   JOURNAL OF HEREDITY

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Identification of a Novel LEA Protein Involved in Freezing Tolerance in Wheat

(2013) Kentaro Sasaki et al.   PLANT AND CELL PHYSIOLOGY

Phytochrome C Is A Key Factor Controlling Long-Day Flowering in Barley

(2013) H. Nishida et al.   PLANT PHYSIOLOGY

BEDOPS: high-performance genomic feature operations

(2012) Shane Neph et al.   BIOINFORMATICS

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Expression conservation within the circadian clock of a monocot: natural variation at barley Ppd-H1 affects circadian expression of flowering time genes, but not clock orthologs

(2012) Chiara Campoli et al.   BMC PLANT BIOLOGY

Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize

(2012) Zhou Fang et al.   GENETICS

A physical, genetic and functional sequence assembly of the barley genome

(2012)   NATURE

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley

(2012) Jordi Comadran et al.   NATURE GENETICS

Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley

(2012) S. Zakhrabekova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic structure and linkage disequilibrium in landrace populations of barley in Sardinia

(2012) Monica Rodriguez et al.   THEORETICAL AND APPLIED GENETICS

The photomorphogenic repressors COP1 and DET1: 20 years later

(2012) On Sun Lau et al.   TRENDS IN PLANT SCIENCE

Leaf dehydroascorbate reductase and catalase activity is associated with soil drought tolerance in bread wheat

(2011) Svetlana V. Osipova et al.   ACTA PHYSIOLOGIAE PLANTARUM

Adaptation of barley to mild winters: A role for PPDH2

(2011) M Cristina Casao et al.   BMC PLANT BIOLOGY

Crop genomics: advances and applications

(2011) Peter L. Morrell et al.   NATURE REVIEWS GENETICS

Structure, expression profile and subcellular localisation of four different sucrose synthase genes from barley

(2011) Cristina Barrero-Sicilia et al.   PLANTA

An Improved Consensus Linkage Map of Barley Based on Flow-Sorted Chromosomes and Single Nucleotide Polymorphism Markers

(2011) María Muñoz-Amatriaín et al.   Plant Genome

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

(2010) David B. Lowry et al.   PLOS BIOLOGY

Selection on grain shattering genes and rates of rice domestication

(2009) Lin-Bin Zhang et al.   NEW PHYTOLOGIST

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Population-Based Resequencing Reveals That the Flowering Time Adaptation of Cultivated Barley Originated East of the Fertile Crescent

(2008) H. Jones et al.   MOLECULAR BIOLOGY AND EVOLUTION

Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice

(2008) Vydehi Kanneganti et al.   PLANT MOLECULAR BIOLOGY