- Home
- Publications
- Publication Search
- Publication Details
Title
A genome and gene catalog of glacier microbiomes
Authors
Keywords
-
Journal
NATURE BIOTECHNOLOGY
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-06-27
DOI
10.1038/s41587-022-01367-2
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Improved metagenome binning and assembly using deep variational autoencoders
- (2021) Jakob Nybo Nissen et al. NATURE BIOTECHNOLOGY
- PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data
- (2021) Laura de Nies et al. Microbiome
- Sensitive protein alignments at tree-of-life scale using DIAMOND
- (2021) Benjamin Buchfink et al. NATURE METHODS
- Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean
- (2021) Marta Royo-Llonch et al. Nature Microbiology
- Potentially pathogenic bacteria isolated from diverse habitats in Spitsbergen, Svalbard
- (2020) Diana C. Mogrovejo-Arias et al. Environmental Earth Sciences
- A complete domain-to-species taxonomy for Bacteria and Archaea
- (2020) Donovan H. Parks et al. NATURE BIOTECHNOLOGY
- Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics
- (2020) Shunan Cao et al. Microbiome
- Glacial ecosystems are essential to understanding biodiversity responses to glacier retreat
- (2020) Marek Stibal et al. Nature Ecology & Evolution
- A unified catalog of 204,938 reference genomes from the human gut microbiome
- (2020) Alexandre Almeida et al. NATURE BIOTECHNOLOGY
- Core handling, transportation and processing for the South Pole ice core (SPICEcore) project
- (2020) Joseph M. Souney et al. ANNALS OF GLACIOLOGY
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments
- (2019) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
- (2019) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- Disappearing Kilimanjaro snow—Are we the last generation to explore equatorial glacier biodiversity?
- (2019) Krzysztof Zawierucha et al. Ecology and Evolution
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- (2019) Dongwan D. Kang et al. PeerJ
- A computational framework to explore large-scale biosynthetic diversity
- (2019) Jorge C. Navarro-Muñoz et al. Nature Chemical Biology
- A global synthesis of biodiversity responses to glacier retreat
- (2019) Sophie Cauvy-Fraunié et al. Nature Ecology & Evolution
- Inhibition of histone deacetylase 1 (HDAC1) and HDAC2 enhances CRISPR/Cas9 genome editing
- (2019) Bin Liu et al. NUCLEIC ACIDS RESEARCH
- Prokaryotes in the WAIS Divide ice core reflect source and transport changes between Last Glacial Maximum and the early Holocene
- (2018) Pamela A. Santibáñez et al. GLOBAL CHANGE BIOLOGY
- Climatic and associated cryospheric, biospheric, and hydrological changes on the Tibetan Plateau: a review
- (2018) Sadia Bibi et al. INTERNATIONAL JOURNAL OF CLIMATOLOGY
- Bacterial communities of cryoconite holes of a temperate alpine glacier show both seasonal trends and year-to-year variability
- (2018) Francesca Pittino et al. ANNALS OF GLACIOLOGY
- VFDB 2019: a comparative pathogenomic platform with an interactive web interface
- (2018) Bo Liu et al. NUCLEIC ACIDS RESEARCH
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- (2018) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Back to the future in a petri dish: Origin and impact of resurrected microbes in natural populations
- (2017) Shira Houwenhuyse et al. Evolutionary Applications
- dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
- (2017) Matthew R Olm et al. ISME Journal
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
- MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
- (2017) Martin Steinegger et al. NATURE BIOTECHNOLOGY
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
- (2017) Ioanna Kalvari et al. NUCLEIC ACIDS RESEARCH
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- The microbiome of glaciers and ice sheets
- (2017) Alexandre M. Anesio et al. npj Biofilms and Microbiomes
- ProCarDB: a database of bacterial carotenoids
- (2016) L. N. U. Nupur et al. BMC MICROBIOLOGY
- CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
- (2016) Baofeng Jia et al. NUCLEIC ACIDS RESEARCH
- KEGG: new perspectives on genomes, pathways, diseases and drugs
- (2016) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
- (2015) Yu-Wei Wu et al. BIOINFORMATICS
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Horizontal gene transfer: building the web of life
- (2015) Shannon M. Soucy et al. NATURE REVIEWS GENETICS
- Microbial ecology of the cryosphere: sea ice and glacial habitats
- (2015) Antje Boetius et al. NATURE REVIEWS MICROBIOLOGY
- UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
- (2014) B. E. Suzek et al. BIOINFORMATICS
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- An integrated catalog of reference genes in the human gut microbiome
- (2014) Junhua Li et al. NATURE BIOTECHNOLOGY
- Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
- (2013) Anthony Levasseur et al. Biotechnology for Biofuels
- The impact of transposable elements in environmental adaptation
- (2013) Elena Casacuberta et al. MOLECULAR ECOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Biological processes on glacier and ice sheet surfaces
- (2012) Marek Stibal et al. Nature Geoscience
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Different glacier status with atmospheric circulations in Tibetan Plateau and surroundings
- (2012) Tandong Yao et al. Nature Climate Change
- Glaciers and ice sheets as a biome
- (2011) Alexandre M. Anesio et al. TRENDS IN ECOLOGY & EVOLUTION
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Infernal 1.0: inference of RNA alignments
- (2009) E. P. Nawrocki et al. BIOINFORMATICS
- GLACIAL ECOSYSTEMS
- (2008) Andy Hodson et al. ECOLOGICAL MONOGRAPHS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search