Arsenophonus apicola sp. nov., isolated from the honeybee Apis mellifera

Transitions in symbiosis: evidence for environmental acquisition and social transmission within a clade of heritable symbionts

(2021) Georgia C. Drew et al.   ISME Journal

TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes

(2021) Jan P Meier-Kolthoff et al.   NUCLEIC ACIDS RESEARCH

Microorganisms in the reproductive tissues of arthropods

(2020) Jessamyn I. Perlmutter et al.   NATURE REVIEWS MICROBIOLOGY

A complete domain-to-species taxonomy for Bacteria and Archaea

(2020) Donovan H. Parks et al.   NATURE BIOTECHNOLOGY

The Hypercomplex Genome of an Insect Reproductive Parasite Highlights the Importance of Lateral Gene Transfer in Symbiont Biology

(2020) Crystal L. Frost et al.   mBio

Genetic manipulation allows in vivo tracking of the life cycle of the son‐killer symbiont, Arsenophonus nasoniae , and reveals patterns of host invasion, tropism and pathology

(2019) Pol Nadal‐Jimenez et al.   ENVIRONMENTAL MICROBIOLOGY

Transmission, relatedness, and the evolution of cooperative symbionts

(2019) Asher Leeks et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

(2019) Pierre-Alain Chaumeil et al.   BIOINFORMATICS

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

(2018) Jongsik Chun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

KBase: The United States Department of Energy Systems Biology Knowledgebase

(2018) Adam P Arkin et al.   NATURE BIOTECHNOLOGY

Identification and occurrence of the hydroxamate siderophores aerobactin, putrebactin, avaroferrin and ochrobactin C as virulence factors from entomopathogenic bacteria

(2017) Merle Hirschmann et al.   ENVIRONMENTAL MICROBIOLOGY

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Identifying bacterial predictors of honey bee health

(2016) Giles E. Budge et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Superparasitism Drives Heritable Symbiont Epidemiology and Host Sex Ratio in a Wasp

(2016) Steven R. Parratt et al.   PLoS Pathogens

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Bacterial Communities Associated with Honey Bee (Apis mellifera) Foragers

(2014) Vanessa Corby-Harris et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Do Honeybees Shape the Bacterial Community Composition in Floral Nectar?

(2013) Yana Aizenberg-Gershtein et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pathogen Webs in Collapsing Honey Bee Colonies

(2012) R. Scott Cornman et al.   PLoS One

A complex journey: transmission of microbial symbionts

(2010) Monika Bright et al.   NATURE REVIEWS MICROBIOLOGY