High-Depth Transcriptome Reveals Differences in Natural Haploid Ginkgo biloba L. Due to the Effect of Reduced Gene Dosage

Transposon insertions regulate genome‐wide allele‐specific expression and underpin flower colour variations in apple ( Malus spp.)

(2022) Yi Tian et al.   PLANT BIOTECHNOLOGY JOURNAL

In vivo maternal haploid induction in tomato

(2021) Yu Zhong et al.   PLANT BIOTECHNOLOGY JOURNAL

In planta haploid induction by genome editing of DMP in the model legume Medicago truncatula

(2021) Na Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Combined application of bud and leaf growth fertilizer improves leaf flavonoids yield of Ginkgo biloba

(2020) Daoming Wu et al.   INDUSTRIAL CROPS AND PRODUCTS

Induction and characterization of polyploids from seeds of Rhododendron fortunei Lindl.

(2020) Lan MO et al.   Journal of Integrative Agriculture

Haplotype-resolved genome analyses of a heterozygous diploid potato

(2020) Qian Zhou et al.   NATURE GENETICS

Metabolome and transcriptome analyses reveal flavonoids biosynthesis differences in Ginkgo biloba associated with environmental conditions

(2020) Ying Guo et al.   INDUSTRIAL CROPS AND PRODUCTS

Selection of Suitable Reference Genes Based on Transcriptomic Data in Ginkgo biloba under Different Experimental Conditions

(2020) Tingting Zhou et al.   Forests

A comparative study on morphological and fruit quality traits of diploid and polyploid carambola (Averrhoa carambola L.) genotypes

(2020) Yulin Hu et al.   SCIENTIA HORTICULTURAE

Study of variation in the growth, photosynthesis, and content of secondary metabolites in Eucommia triploids

(2019) Yun Li et al.   TREES-STRUCTURE AND FUNCTION

Breeding decaploid strawberry with improved cold resistance and fruit quality

(2019) Gangjun Luo et al.   SCIENTIA HORTICULTURAE

Improvement strategies for the oral bioavailability of poorly water-soluble flavonoids: An overview

(2019) Juanjuan Zhao et al.   INTERNATIONAL JOURNAL OF PHARMACEUTICS

Autopolyploidy effect on morphological variation and essential oil content in Thymus vulgaris L.

(2019) Yamen Homaidan Shmeit et al.   SCIENTIA HORTICULTURAE

OUP accepted manuscript

(2018)   BIOINFORMATICS

Nucleus-Encoded Protein BFA1 Promotes Efficient Assembly of the Chloroplast ATP Synthase Coupling Factor 1

(2018) Lin Zhang et al.   PLANT CELL

Comprehensive transcriptome analysis and flavonoid profiling of Ginkgo leaves reveals flavonoid content alterations in day–night cycles

(2018) Jun Ni et al.   PLoS One

Aneuploidization under segmental allotetraploidy in rice and its phenotypic manifestation

(2018) Ying Wu et al.   THEORETICAL AND APPLIED GENETICS

De novo transcriptome analysis revealed genes involved in flavonoid biosynthesis, transport and regulation in Ginkgo biloba

(2018) Yaqiong Wu et al.   INDUSTRIAL CROPS AND PRODUCTS

Multiple haploids, triploids, and tetraploids found in modern-day “living fossil” Ginkgo biloba

(2018) Petr Šmarda et al.   Horticulture Research

MATRILINEAL, a sperm-specific phospholipase, triggers maize haploid induction

(2017) Timothy Kelliher et al.   NATURE

Transcriptome analysis of neo-tetraploid rice reveals specific differential gene expressions associated with fertility and heterosis

(2017) Haibin Guo et al.   Scientific Reports

NaCl Induces Flavonoid Biosynthesis through a Putative Novel Pathway in Post-harvest Ginkgo Leaves

(2017) Jun Ni et al.   Frontiers in Plant Science

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Polyploidy in a ‘living fossil’Ginkgo biloba

(2016) Petr Šmarda et al.   NEW PHYTOLOGIST

Induction of tetraploid hardy rubber tree, Eucommia ulmoides, and phenotypic differences from diploid

(2016) Yuji Tokumoto et al.   Plant Biotechnology

Involvement of Auxin and Brassinosteroid in Dwarfism of Autotetraploid Apple (Malus × domestica)

(2016) Yue Ma et al.   Scientific Reports

Haploids: Constraints and opportunities in plant breeding

(2015) Sangam L. Dwivedi et al.   BIOTECHNOLOGY ADVANCES

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Temperature has more effects than soil moisture on biosynthesis of flavonoids in Ginkgo (Ginkgo biloba L.) leaves

(2014) Guibin Wang et al.   NEW FORESTS

Light intensity affects the growth and flavonol biosynthesis of Ginkgo (Ginkgo biloba L.)

(2014) You Xu et al.   NEW FORESTS

In vitro induction of tetraploids in an interspecific hybrid of Calanthe (Calanthe discolor × Calanthe sieboldii) through colchicine and oryzalin treatments

(2014) Mi Young Chung et al.   Plant Biotechnology Reports

The Life and Times of a Living Fossil

(2013) J. C. McElwain   SCIENCE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The limitations of simple gene set enrichment analysis assuming gene independence

(2012) Pablo Tamayo et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

Large changes in anatomy and physiology between diploid Rangpur lime (Citrus limonia) and its autotetraploid are not associated with large changes in leaf gene expression

(2011) T. Allario et al.   JOURNAL OF EXPERIMENTAL BOTANY

Complex Interactions between Phytochemicals. The Multi-Target Therapeutic Concept of Phytotherapy

(2010) Thomas Efferth et al.   CURRENT DRUG TARGETS

Haploids in flowering plants: origins and exploitation

(2010) Jim M. Dunwell   PLANT BIOTECHNOLOGY JOURNAL

Tetraploid muskmelon alters morphological characteristics and improves fruit quality

(2010) Wenqian Zhang et al.   SCIENTIA HORTICULTURAE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

(2009) Peter von Dassow et al.   GENOME BIOLOGY