Demographic histories shape population genomics of the common coral grouper ( Plectropomus leopardus )

Demographic histories shape population genomics of the common coral grouper ( Plectropomus leopardus )

(2022) Samuel D. Payet et al.   Evolutionary Applications

Spatial and temporal genetic variation in an exploited reef fish: the effects of exploitation on cohort genetic structure

(2021) Zahra S. Taboun et al.   Evolutionary Applications

The population genomics of repeated freshwater colonizations by Gulf pipefish

(2021) Sarah P. Flanagan et al.   MOLECULAR ECOLOGY

Age, growth and reproductive life‐history characteristics infer a high population productivity for the sustainably fished protogynous hermaphroditic yellowspotted rockcod ( Epinephelus areolatus ) in north‐western Australia

(2021) Dion K. Boddington et al.   JOURNAL OF FISH BIOLOGY

Redundancy Analysis (RDA): a Swiss Army knife for landscape genomics

(2021) Thibaut Capblancq et al.   Methods in Ecology and Evolution

Systematics of European coastal anchovies (genus Engraulis  Cuvier)

(2021) François Bonhomme et al.   JOURNAL OF FISH BIOLOGY

Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

(2021) Marie Louis et al.   Science Advances

GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

(2020) Ekaterina Noskova et al.   GigaScience

Coping with Pleistocene climatic fluctuations: demographic responses in remote endemic reef fishes

(2020) Erwan Delrieu‐Trottin et al.   MOLECULAR ECOLOGY

Comparative demography of commercially important species of coral grouper, Plectropomus leopardus and P. laevis , from Australia's Great Barrier Reef and Coral Sea Marine Parks

(2020) Samuel D. Payet et al.   JOURNAL OF FISH BIOLOGY

Dependency of Queensland and the Great Barrier Reef’s tropical fisheries on reef-associated fish

(2020) Christopher J. Brown et al.   Scientific Reports

Direct and indirect effects of heatwaves on a coral reef fishery

(2020) Christopher J. Brown et al.   GLOBAL CHANGE BIOLOGY

Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

(2019) Florentine Riquet et al.   EVOLUTION

Expansion history and environmental suitability shape effective population size in a plant invasion

(2019) Joseph Braasch et al.   MOLECULAR ECOLOGY

Successful validation of a larval dispersal model using genetic parentage data

(2019) Michael Bode et al.   PLOS BIOLOGY

Genomic and geographic footprints of differential introgression between two divergent fish species (Solea spp.)

(2018) Ahmed Souissi et al.   HEREDITY

The Genetic Architecture Underlying the Evolution of a Rare Piscivorous Life History Form in Brown Trout after Secondary Contact and Strong Introgression

(2018) Arne Jacobs et al.   Genes

Back-to-back coral bleaching events on isolated atolls in the Coral Sea

(2018) Hugo B. Harrison et al.   CORAL REEFS

Latitudinal and seasonal variation in space use by a large, predatory reef fish, Plectropomus leopardus

(2018) Molly E. Scott et al.   FUNCTIONAL ECOLOGY

Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation

(2017) Julien Jouganous et al.   GENETICS

Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)

(2017) Clément Rougeux et al.   Genome Biology and Evolution

Genome architecture enables local adaptation of Atlantic cod despite high connectivity

(2017) Julia M. I. Barth et al.   MOLECULAR ECOLOGY

Widespread hybridization and bidirectional introgression in sympatric species of coral reef fish

(2017) Hugo B. Harrison et al.   MOLECULAR ECOLOGY

Island biogeography of marine organisms

(2017) Hudson T. Pinheiro et al.   NATURE

Global warming and recurrent mass bleaching of corals

(2017) Terry P. Hughes et al.   NATURE

Deriving genotypes from RAD-seq short-read data using Stacks

(2017) Nicolas C Rochette et al.   Nature Protocols

Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation

(2017) Julien Jouganous et al.   GENETICS

Large-scale, multidirectional larval connectivity among coral reef fish populations in the Great Barrier Reef Marine Park

(2016) David H. Williamson et al.   MOLECULAR ECOLOGY

Parallel genetic divergence among coastal-marine ecotype pairs of European anchovy explained by differential introgression after secondary contact

(2016) A. Le Moan et al.   MOLECULAR ECOLOGY

stratag: Anrpackage for manipulating, summarizing and analysing population genetic data

(2016) Frederick I. Archer et al.   Molecular Ecology Resources

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

Key aspects of the biology, fisheries and management of Coral grouper

(2016) Ashley J. Frisch et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Effects of climate change on coral grouper (Plectropomus spp.) and possible adaptation options

(2016) Morgan S. Pratchett et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Expectations and Outcomes of Reserve Network Performance following Re-zoning of the Great Barrier Reef Marine Park

(2015) Michael J. Emslie et al.   CURRENT BIOLOGY

On the origin of endemic species in the Red Sea

(2015) Joseph D. DiBattista et al.   JOURNAL OF BIOGEOGRAPHY

Genomic signatures of geographic isolation and natural selection in coral reef fishes

(2015) Michelle R. Gaither et al.   MOLECULAR ECOLOGY

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Large predatory coral trout species unlikely to meet increasing energetic demands in a warming ocean

(2015) J.L. Johansen et al.   Scientific Reports

Predators drive community structure in coral reef fish assemblages

(2015) A. E. Boaden et al.   Ecosphere

Larval dispersal and movement patterns of coral reef fishes, and implications for marine reserve network design

(2014) Alison L. Green et al.   BIOLOGICAL REVIEWS

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

Shifting seas: the impacts of Pleistocene sea-level fluctuations on the evolution of tropical marine taxa

(2014) William B. Ludt et al.   JOURNAL OF BIOGEOGRAPHY

Retention of Habitat Complexity Minimizes Disassembly of Reef Fish Communities following Disturbance: A Large-Scale Natural Experiment

(2014) Michael J. Emslie et al.   PLoS One

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

(2014) Mbaye Tine et al.   Nature Communications

Habitat dynamics, marine reserve status, and the decline and recovery of coral reef fish communities

(2014) David H. Williamson et al.   Ecology and Evolution

Increasing ocean temperatures reduce activity patterns of a large commercially important coral reef fish

(2013) J. L. Johansen et al.   GLOBAL CHANGE BIOLOGY

ENSO and Short-Term Variability of the South Equatorial Current Entering the Coral Sea

(2013) William S. Kessler et al.   JOURNAL OF PHYSICAL OCEANOGRAPHY

Drivers of population genetic differentiation in the wild: isolation by dispersal limitation, isolation by adaptation and isolation by colonization

(2013) Luisa Orsini et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

The origins of tropical marine biodiversity

(2013) Brian W. Bowen et al.   TRENDS IN ECOLOGY & EVOLUTION

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

Open and closed seascapes: Where does habitat patchiness create populations with high fractions of self-recruitment?

(2012) Malin L. Pinsky et al.   ECOLOGICAL APPLICATIONS

Fishing groupers towards extinction: a global assessment of threats and extinction risks in a billion dollar fishery

(2012) Yvonne Sadovy de Mitcheson et al.   FISH AND FISHERIES

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Phylogeography of the reef fish Cephalopholis argus(Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle

(2011) Michelle R Gaither et al.   BMC EVOLUTIONARY BIOLOGY

The effect of coral morphology on shelter selection by coral reef fishes

(2011) J. T. Kerry et al.   CORAL REEFS

Historical and contemporary factors shape the population genetic structure of the broadcast spawning coral, Acropora millepora, on the Great Barrier Reef

(2011) MADELEINE J. H. Van OPPEN et al.   MOLECULAR ECOLOGY

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

Strong genetic but not spatial subdivision of two reef fish species targeted by fishers on the Great Barrier Reef

(2009) R.D. Evans et al.   FISHERIES RESEARCH

Complex patterns of population structure and recruitment of Plectropomus leopardus (Pisces: Epinephelidae) in the Indo-West Pacific: implications for fisheries management

(2009) Lynne Van Herwerden et al.   MARINE BIOLOGY

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Phylogeography: retrospect and prospect

(2008) John C. Avise   JOURNAL OF BIOGEOGRAPHY

Assessment of an underwater biopsy probe for collecting teleost fish tissue samples

(2008) RD Evans   MARINE ECOLOGY PROGRESS SERIES