Application of explainable artificial intelligence in the identification of Squamous Cell Carcinoma biomarkers

A hitchhiker's guide to single-cell transcriptomics and data analysis pipelines

(2021) Richa Nayak et al.   GENOMICS

Optimization of metabolomic data processing using NOREVA

(2021) Jianbo Fu et al.   Nature Protocols

NOREVA: enhanced normalization and evaluation of time-course and multi-class metabolomic data

(2020) Qingxia Yang et al.   NUCLEIC ACIDS RESEARCH

Non-Melanoma Skin Cancers: Biological and Clinical Features

(2020) Mauro Cives et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Advancing Personalized Medicine Through the Application of Whole Exome Sequencing and Big Data Analytics

(2019) Pawel Suwinski et al.   Frontiers in Genetics

Predictability of human differential gene expression

(2019) Megan Crow et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GTSE1 is involved in breast cancer progression in p53 mutation-dependent manner

(2019) Fen Lin et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

Identification of the gene signature reflecting schizophrenia’s etiology by constructing artificial intelligence‐based method of enhanced reproducibility

(2019) Qing‐Xia Yang et al.   CNS Neuroscience & Therapeutics

Machine learning-based microarray analyses indicate low-expression genes might collectively influence PAH disease

(2019) Song Cui et al.   PLoS Computational Biology

Diagnostic Tumor Markers in Head and Neck Squamous Cell Carcinoma (HNSCC) in the Clinical Setting

(2019) Panagiota Economopoulou et al.   Frontiers in Oncology

Convolutional neural network-based annotation of bacterial type IV secretion system effectors with enhanced accuracy and reduced false discovery

(2019) Jiajun Hong et al.   BRIEFINGS IN BIOINFORMATICS

GTSE1, CDC20, PCNA, and MCM6 Synergistically Affect Regulations in Cell Cycle and Indicate Poor Prognosis in Liver Cancer

(2019) Yongchang Zheng et al.   Analytical Cellular Pathology

OUP accepted manuscript

(2018)   BRIEFINGS IN BIOINFORMATICS

Identification of Biomarker for Cutaneous Squamous Cell Carcinoma Using Microarray Data Analysis

(2018) Wei Wei et al.   Journal of Cancer

Peeking inside the black-box: A survey on Explainable Artificial Intelligence (XAI)

(2018) Amina Adadi et al.   IEEE Access

ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies

(2018) Jing Tang et al.   BRIEFINGS IN BIOINFORMATICS

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Overexpression of G2 and S phase-expressed-1 contributes to cell proliferation, migration, and invasion via regulating p53/FoxM1/CCNB1 pathway and predicts poor prognosis in bladder cancer

(2018) Anwei Liu et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

HnRNPM and CD44s expression affects tumor aggressiveness and predicts poor prognosis in breast cancer with axillary lymph node metastases

(2017) Huizhi Sun et al.   GENES CHROMOSOMES & CANCER

NOREVA: normalization and evaluation of MS-based metabolomics data

(2017) Bo Li et al.   NUCLEIC ACIDS RESEARCH

The role of cofilin-l in vulvar squamous cell carcinoma: A marker of carcinogenesis, progression and targeted therapy

(2016) QIONG WU et al.   ONCOLOGY REPORTS

DJ-1 Is Upregulated in Oral Squamous Cell Carcinoma and Promotes Oral Cancer Cell Proliferation and Invasion

(2016) Shuaimei Xu et al.   Journal of Cancer

An Islet-Targeted Genome-Wide Association Scan Identifies Novel Genes Implicated in Cytokine-Mediated Islet Stress in Type 2 Diabetes

(2015) Poonam R. Sharma et al.   ENDOCRINOLOGY

Diagnosis and treatment of invasive squamous cell carcinoma of the skin: European consensus-based interdisciplinary guideline

(2015) Alexander Stratigos et al.   EUROPEAN JOURNAL OF CANCER

Incidence Estimate of Nonmelanoma Skin Cancer (Keratinocyte Carcinomas) in the US Population, 2012

(2015) Howard W. Rogers et al.   JAMA Dermatology

TIMP-2 Interaction with MT1-MMP Activates the AKT Pathway and Protects Tumor Cells from Apoptosis

(2015) Cristina Valacca et al.   PLoS One

Cell type-restricted activity of hnRNPM promotes breast cancer metastasis via regulating alternative splicing

(2014) Y. Xu et al.   GENES & DEVELOPMENT

Identification of novel epigenetically inactivated gene PAMR1 in breast carcinoma

(2014) PAULISALLY HAU YI LO et al.   ONCOLOGY REPORTS

A comparison of methods for differential expression analysis of RNA-seq data

(2013) Charlotte Soneson et al.   BMC BIOINFORMATICS

Non-Melanoma Skin Cancer Incidence and Impact of Skin Cancer Screening on Incidence

(2013) Nora Eisemann et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

DJ-1/park7 protects against neointimal formation via the inhibition of vascular smooth muscle cell growth

(2012) Kyung Jong Won et al.   CARDIOVASCULAR RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

DJ-1 promotes angiogenesis and osteogenesis by activating FGF receptor-1 signaling

(2012) Jung-Min Kim et al.   Nature Communications

CD44 splice isoform switching in human and mouse epithelium is essential for epithelial-mesenchymal transition and breast cancer progression

(2011) Rhonda L. Brown et al.   JOURNAL OF CLINICAL INVESTIGATION

Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast

(2010) Lesleyann Hawthorn et al.   BMC CANCER

DJ-1 binds to mitochondrial complex I and maintains its activity

(2009) Takuya Hayashi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The opposing roles of Wnt-5a in cancer

(2009) S L McDonald et al.   BRITISH JOURNAL OF CANCER