Network and meta-omics reveal the cooperation patterns and mechanisms in an efficient 1,4-dioxane-degrading microbial consortium

Identification of Novel 1,4-Dioxane Degraders and Related Genes from Activated Sludge by Taxonomic and Functional Gene Sequence Analysis

(2021) Ruihuan Chen et al.   JOURNAL OF HAZARDOUS MATERIALS

Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community

(2021) Sonja Blasche et al.   Nature Microbiology

Chemo-metrically formulated consortium with selectively screened bacterial strains for ameliorated biotransformation and detoxification of 1,4-dioxane

(2021) Mansi Kikani et al.   JOURNAL OF HAZARDOUS MATERIALS

Acinetobacter tandoii ZM06 Assists Glutamicibacter nicotianae ZM05 in Resisting Cadmium Pressure to Preserve Dipropyl Phthalate Biodegradation

(2021) Xuejun Wang et al.   Microorganisms

Enrichment of novel Actinomycetales and the detection of monooxygenases during aerobic 1,4-dioxane biodegradation with uncontaminated and contaminated inocula

(2020) Vidhya Ramalingam et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Monitoring, assessment, and prediction of microbial shifts in coupled catalysis and biodegradation of 1,4-dioxane and co-contaminants

(2020) Yu Miao et al.   WATER RESEARCH

Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer

(2020) Ohana Y. A. Costa et al.   Microbiome

Network-directed efficient isolation of previously uncultivated Chloroflexi and related bacteria in hot spring microbial mats

(2020) Wen-Dong Xian et al.   npj Biofilms and Microbiomes

Discovery of an Inducible Toluene Monooxygenase that Co-oxidizes 1,4-Dioxane and 1,1-Dichloroethylene in Propanotrophic Azoarcus sp. DD4

(2020) Daiyong Deng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biogeographic patterns of microbial co-occurrence ecological networks in six American forests

(2020) Qichao Tu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Thiamine-Mediated Cooperation Between Auxotrophic Rhodococcus ruber ZM07 and Escherichia coli K12 Drives Efficient Tetrahydrofuran Degradation

(2020) Hui Huang et al.   Frontiers in Microbiology

Network-directed isolation of the cooperator Pseudomonas aeruginosa ZM03 enhanced the dibutyl phthalate degradation capacity of Arthrobacter nicotianae ZM05 under pH stress

(2020) Xuejun Wang et al.   JOURNAL OF HAZARDOUS MATERIALS

An integrated meta-omics approach reveals substrates involved in synergistic interactions in a bisphenol A (BPA)-degrading microbial community

(2019) Ke Yu et al.   Microbiome

Bacterial quorum sensing in complex and dynamically changing environments

(2019) Sampriti Mukherjee et al.   NATURE REVIEWS MICROBIOLOGY

Synthetic microbial consortia for biosynthesis and biodegradation: promises and challenges

(2019) Shun Che et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments

(2019) Xiyang Dong et al.   Nature Communications

Novel tetrahydrofuran (THF) degradation-associated genes and cooperation patterns of a THF-degrading microbial community as revealed by metagenomic

(2019) Minbo Qi et al.   CHEMOSPHERE

Enhanced acid-stress tolerance in Lactococcus lactis NZ9000 by overexpression of ABC transporters

(2019) Zhengming Zhu et al.   Microbial Cell Factories

Microbial response to acid stress: mechanisms and applications

(2019) Ningzi Guan et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

1,4-Dioxane as an emerging water contaminant: State of the science and evaluation of research needs

(2019) Krystal J. Godri Pollitt et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Enrichment and Analysis of Stable 1,4-dioxane-Degrading Microbial Consortia Consisting of Novel Dioxane-Degraders

(2019) Tanmoy Roy Tusher et al.   Microorganisms

Biotechnological potential of microbial consortia and future perspectives

(2018) Shashi Kant Bhatia et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Abiotic and bioaugmented granular activated carbon for the treatment of 1,4-dioxane-contaminated water

(2018) Michelle A. Myers et al.   ENVIRONMENTAL POLLUTION

Inhibition of 1, 4-dioxane on the denitrification process by altering the viability and metabolic activity of Paracoccus denitrificans

(2018) Jingyang Luo et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Aerobic biodegradation kinetics for 1,4-dioxane under metabolic and cometabolic conditions

(2018) Francisco J. Barajas-Rodriguez et al.   JOURNAL OF HAZARDOUS MATERIALS

Co-occurrence Networks Among Bacteria and Microbial Eukaryotes of Lake Baikal During a Spring Phytoplankton Bloom

(2018) Ivan S. Mikhailov et al.   MICROBIAL ECOLOGY

Response and recovery of microbial communities subjected to oxidative and biological treatments of 1,4-dioxane and co-contaminants

(2018) Yu Miao et al.   WATER RESEARCH

Mechanism of 1,4-dioxane microbial degradation revealed by 16S rRNA and metatranscriptomic analyses

(2017) Xiangyu Guan et al.   WATER SCIENCE AND TECHNOLOGY

pH Stress-Induced Cooperation between Rhodococcus ruber YYL and Bacillus cereus MLY1 in Biodegradation of Tetrahydrofuran

(2017) Zubi Liu et al.   Frontiers in Microbiology

Principles for designing synthetic microbial communities

(2016) Nathan I Johns et al.   CURRENT OPINION IN MICROBIOLOGY

Intermediates and substrate interaction of 1,4-dioxane degradation by the effective metabolizer Xanthobacter flavus DT8

(2016) Dong-Zhi Chen et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Structural and Kinetic Characteristics of 1,4-Dioxane-Degrading Bacterial Consortia Containing the Phylum TM7

(2016) Ji-Hyun Nam et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Resistant Microbial Cooccurrence Patterns Inferred by Network Topology

(2015) Sari Peura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Better together: engineering and application of microbial symbioses

(2015) Stephanie G Hays et al.   CURRENT OPINION IN BIOTECHNOLOGY

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Reconstruction and Gene Expression of “Candidatus Accumulibacter phosphatis” Clade IB Performing Biological Phosphorus Removal

(2014) Yanping Mao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants

(2013) Feng Ju et al.   ENVIRONMENTAL MICROBIOLOGY

Widespread Distribution of Soluble Di-Iron Monooxygenase (SDIMO) Genes in Arctic Groundwater Impacted by 1,4-Dioxane

(2013) Mengyan Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota

(2013) Yongfei Hu et al.   Nature Communications

Glyoxylate Metabolism Is a Key Feature of the Metabolic Degradation of 1,4-Dioxane by Pseudonocardia dioxanivorans Strain CB1190

(2012) Ariel Grostern et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Mesorhizobium muleiense sp. nov., nodulating with Cicer arietinum L.

(2012) J. J. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Complexity of cell–cell interactions between Pseudomonas sp. AS1 and Acinetobacter oleivorans DR1: metabolic commensalism, biofilm formation and quorum quenching

(2011) Hyoju Seo et al.   RESEARCH IN MICROBIOLOGY

Relationship between the resistance to bile salts and low pH with exopolysaccharide (EPS) production of Bifidobacterium spp. isolated from infants feces and breast milk

(2009) Gulcin Alp et al.   ANAEROBE