Benthic Biofilms in Glacier-Fed Streams from Scandinavia to the Himalayas Host Distinct Bacterial Communities Compared with the Streamwater

Regimes of primary production and their drivers in Alpine streams

(2021) Marta Boix Canadell et al.   FRESHWATER BIOLOGY

Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome

(2021) Stilianos Fodelianakis et al.   ISME Journal

Co-existing water and sediment bacteria are driven by contrasting environmental factors across glacier-fed aquatic systems

(2021) Liyan Zhang et al.   WATER RESEARCH

Influence of prokaryotic microorganisms on initial soil formation along a glacier forefield on King George Island, maritime Antarctica

(2021) Patryk Krauze et al.   Scientific Reports

Fate of glacier surface snow‐originating bacteria in the glacier‐fed hydrologic continuums

(2021) Keshao Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in reclamation management strategies shape the role of exopolysaccharide and lipopolysaccharide‐producing bacteria during soil formation

(2020) Miljenka Vuko et al.   Microbial Biotechnology

Alpine headwaters emerging from glaciers and rock glaciers host different bacterial communities: Ecological implications for the future

(2020) Monica Tolotti et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity

(2020) Renmao Tian et al.   Microbiome

Community assembly processes underlying the temporal dynamics of glacial stream and lake bacterial communities

(2020) Zhengquan Gu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Microbial assemblages reflect environmental heterogeneity in alpine streams

(2019) Scott Hotaling et al.   GLOBAL CHANGE BIOLOGY

The Phylogeny, Biodiversity, and Ecology of the Chloroflexi in Activated Sludge

(2019) Lachlan B. M. Speirs et al.   Frontiers in Microbiology

Diversity-triggered deterministic bacterial assembly constrains community functions

(2019) Weibing Xun et al.   Nature Communications

A global synthesis of biodiversity responses to glacier retreat

(2019) Sophie Cauvy-Fraunié et al.   Nature Ecology & Evolution

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Microbial ecology of mountain glacier ecosystems: biodiversity, ecological connections and implications of a warming climate

(2017) Scott Hotaling et al.   ENVIRONMENTAL MICROBIOLOGY

Longitudinal variation of microbial communities in benthic biofilms and association with hydrological and physicochemical conditions in glacier-fed streams

(2017) Ze Ren et al.   Freshwater Science

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

(2017) Zachary S. L. Foster et al.   PLoS Computational Biology

Longitudinal variation of microbial communities in benthic biofilms and association with hydrological and physicochemical conditions in glacier-fed streams

(2017) Ze Ren et al.   Freshwater Science

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The ecology and biogeochemistry of stream biofilms

(2016) Tom J. Battin et al.   NATURE REVIEWS MICROBIOLOGY

Terrestrial origin of bacterial communities in complex boreal freshwater networks

(2015) Clara Ruiz-González et al.   ECOLOGY LETTERS

Bacterial diversity along a 2600 km river continuum

(2015) Domenico Savio et al.   ENVIRONMENTAL MICROBIOLOGY

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Historically unprecedented global glacier decline in the early 21st century

(2015) Michael Zemp et al.   JOURNAL OF GLACIOLOGY

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams

(2014) Linda Wilhelm et al.   ENVIRONMENTAL MICROBIOLOGY

Metacommunity organisation, spatial extent and dispersal in aquatic systems: patterns, processes and prospects

(2014) Jani Heino et al.   FRESHWATER BIOLOGY

Microbial biodiversity in glacier-fed streams

(2013) Linda Wilhelm et al.   ISME Journal

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Unraveling assembly of stream biofilm communities

(2012) Katharina Besemer et al.   ISME Journal

Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils

(2012) Byron C Crump et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

Environmental harshness and global richness patterns in glacier-fed streams

(2011) Dean Jacobsen et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

The biofilm matrix

(2010) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY