Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations

Interpretation of Solution X-Ray Scattering by Explicit-Solvent Molecular Dynamics

(2015) Po-chia Chen et al.   BIOPHYSICAL JOURNAL

WAXSiS: a web server for the calculation of SAXS/WAXS curves based on explicit-solvent molecular dynamics

(2015) Christopher J. Knight et al.   NUCLEIC ACIDS RESEARCH

Validating Solution Ensembles from Molecular Dynamics Simulation by Wide-Angle X-ray Scattering Data

(2014) Po-chia Chen et al.   BIOPHYSICAL JOURNAL

Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids

(2014) Hung T. Nguyen et al.   JOURNAL OF CHEMICAL PHYSICS

Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser

(2014) David Arnlund et al.   NATURE METHODS

Synchrotron-based small-angle X-ray scattering of proteins in solution

(2014) Soren Skou et al.   Nature Protocols

Why double-stranded RNA resists condensation

(2014) Igor S. Tolokh et al.   NUCLEIC ACIDS RESEARCH

Wide-Angle X-Ray Solution Scattering for Protein-Ligand Binding: Multivariate Curve Resolution with Bayesian Confidence Intervals

(2013) David D.L. Minh et al.   BIOPHYSICAL JOURNAL

Impact and progress in small and wide angle X-ray scattering (SAXS and WAXS)

(2013) Melissa A Graewert et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Advances in X-ray scattering: from solution SAXS to achievements with coherent beams

(2012) Javier Pérez et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Modeling the Hydration Layer around Proteins: Applications to Small- and Wide-Angle X-Ray Scattering

(2011) Jouko Juhani Virtanen et al.   BIOPHYSICAL JOURNAL

Double-Stranded RNA Resists Condensation

(2011) Li Li et al.   PHYSICAL REVIEW LETTERS

Biomolecular solution X-ray scattering at the National Synchrotron Light Source

(2010) Marc Allaire et al.   JOURNAL OF SYNCHROTRON RADIATION

DichroCalc--circular and linear dichroism online

(2009) B. M. Bulheller et al.   BIOINFORMATICS

SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules

(2009) Jaydeep Bardhan et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Simulated x-ray scattering of protein solutions using explicit-solvent models

(2009) Sanghyun Park et al.   JOURNAL OF CHEMICAL PHYSICS

Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering

(2008) Marco Cammarata et al.   NATURE METHODS

Towards a molecular dynamics consensus view of B-DNA flexibility

(2008) Alberto Pérez et al.   NUCLEIC ACIDS RESEARCH