Nonequilibrium all-atom molecular dynamics simulation of the bubble cavitation and application to dissociate amyloid fibrils

Amyloid β Protein and Alzheimer’s Disease: When Computer Simulations Complement Experimental Studies

(2015) Jessica Nasica-Labouze et al.   CHEMICAL REVIEWS

Molecular insight into amyloid oligomer destabilizing mechanism of flavonoid derivative 2-(4′ benzyloxyphenyl)-3-hydroxy-chromen-4-one through docking and molecular dynamics simulations

(2015) Akhil Kumar et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Picosecond dissociation of amyloid fibrils with infrared laser: A nonequilibrium simulation study

(2015) Man Hoang Viet et al.   JOURNAL OF CHEMICAL PHYSICS

Sonoporation at Small and Large Length Scales: Effect of Cavitation Bubble Collapse on Membranes

(2015) Haohao Fu et al.   Journal of Physical Chemistry Letters

Examining the Mechanical Equilibrium of Microscopic Stresses in Molecular Simulations

(2015) Alejandro Torres-Sánchez et al.   PHYSICAL REVIEW LETTERS

Amyloid Fibril Disruption by Ultrasonic Cavitation: Nonequilibrium Molecular Dynamics Simulations

(2014) Hisashi Okumura et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Mid-infrared free-electron laser tuned to the amide I band for converting insoluble amyloid-like protein fibrils into the soluble monomeric form

(2014) Takayasu Kawasaki et al.   LASERS IN MEDICAL SCIENCE

Acceleration of the depolymerization of amyloid β fibrils by ultrasonication

(2013) Hisashi Yagi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Conformational Stability of Fibrillar Amyloid-Beta Oligomers via Protofilament Pair Formation – A Systematic Computational Study

(2013) Anna Kahler et al.   PLoS One

Effect of Mid-infrared Free-Electron Laser Irradiation on Refolding of Amyloid-Like Fibrils of Lysozyme into Native Form

(2012) Takayasu Kawasaki et al.   PROTEIN JOURNAL

Characterization and anti-tumor activity of chemical conjugation of doxorubicin in polymeric micelles (DOX-P) in vitro

(2011) Ying-Zheng Zhao et al.   CANCER LETTERS

Amyloid Features and Neuronal Toxicity of Mature Prion Fibrils Are Highly Sensitive to High Pressure

(2011) Driss El Moustaine et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular dynamics simulation of bubble nucleation in Carbon Dioxide/Hexadecane Solution as an analog to foaming of polyethylene by Super Critical Carbon Dioxide

(2011) Ming Zhai et al.   JOURNAL OF PLASTIC FILM & SHEETING

A quantitative pressure and microbubble-size dependence study of focused ultrasound-induced blood-brain barrier opening reversibility in vivo using MRI

(2011) Gesthimani Samiotaki et al.   MAGNETIC RESONANCE IN MEDICINE

Noninvasive and localized neuronal delivery using short ultrasonic pulses and microbubbles

(2011) J. J. Choi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-scale molecular dynamics verification of the Rayleigh-Plesset approximation for collapse of nanobubbles

(2010) Robert Hołyst et al.   PHYSICAL REVIEW E

Improved side-chain torsion potentials for the Amber ff99SB protein force field

(2010) Kresten Lindorff-Larsen et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Microbubble-Size Dependence of Focused Ultrasound-Induced Blood–Brain Barrier Opening in Mice In Vivo

(2009) J.J. Choi et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Ultrasonication-dependent production and breakdown lead to minimum-sized amyloid fibrils

(2009) E. Chatani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Micelles and nanoparticles for ultrasonic drug and gene delivery

(2008) Ghaleb A. Husseini et al.   ADVANCED DRUG DELIVERY REVIEWS

Explosive cavitation in superheated liquid argon

(2008) V. E. Vinogradov et al.   JOURNAL OF CHEMICAL PHYSICS

Effects of Acoustic Parameters and Ultrasound Contrast Agent Dose on Focused-Ultrasound Induced Blood-Brain Barrier Disruption

(2008) Nathan McDannold et al.   ULTRASOUND IN MEDICINE AND BIOLOGY