Generalized flexibility-rigidity index

Communication: Capturing protein multiscale thermal fluctuations

(2015) Kristopher Opron et al.   JOURNAL OF CHEMICAL PHYSICS

Multiresolution persistent homology for excessively large biomolecular datasets

(2015) Kelin Xia et al.   JOURNAL OF CHEMICAL PHYSICS

Multiscale Gaussian network model (mGNM) and multiscale anisotropic network model (mANM)

(2015) Kelin Xia et al.   JOURNAL OF CHEMICAL PHYSICS

pKa predictions for proteins, RNAs, and DNAs with the Gaussian dielectric function using DelPhi pKa

(2015) Lin Wang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Molecular nonlinear dynamics and protein thermal uncertainty quantification

(2014) Kelin Xia et al.   CHAOS

Fast and anisotropic flexibility-rigidity index for protein flexibility and fluctuation analysis

(2014) Kristopher Opron et al.   JOURNAL OF CHEMICAL PHYSICS

Coarse Grained Normal Mode Analysis vs. Refined Gaussian Network Model for Protein Residue-Level Structural Fluctuations

(2013) Jun-Koo Park et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Multiscale multiphysics and multidomain models—Flexibility and rigidity

(2013) Kelin Xia et al.   JOURNAL OF CHEMICAL PHYSICS

On the Dielectric “Constant” of Proteins: Smooth Dielectric Function for Macromolecular Modeling and Its Implementation in DelPhi

(2013) Lin Li et al.   Journal of Chemical Theory and Computation

Stochastic model for protein flexibility analysis

(2013) Kelin Xia et al.   PHYSICAL REVIEW E

Density-cluster NMA: A new protein decomposition technique for coarse-grained normal mode analysis

(2012) Omar N. A. Demerdash et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

ProDy: Protein Dynamics Inferred from Theory and Experiments

(2011) A. Bakan et al.   BIOINFORMATICS

Differential Geometry Based Multiscale Models

(2010) Guo-Wei Wei   BULLETIN OF MATHEMATICAL BIOLOGY

Differential geometry based solvation model I: Eulerian formulation

(2010) Zhan Chen et al.   JOURNAL OF COMPUTATIONAL PHYSICS