Oncofetal Epigenetic Bivalency in Breast Cancer Cells: H3K4 and H3K27 Tri-Methylation as a Biomarker for Phenotypic Plasticity

Genome-wide profiling of histone H3 lysine 27 and lysine 4 trimethylation in multiple myeloma reveals the importance of Polycomb gene targeting and highlights EZH2 as a potential therapeutic target

(2016) Prasoon Agarwal et al.   Oncotarget

Histone H3 lysine 4 acetylation and methylation dynamics define breast cancer subtypes

(2016) Terri L. Messier et al.   Oncotarget

Messenger RNA profile analysis deciphers new Esrrb responsive genes in prostate cancer cells

(2015) Yuan Lu et al.   BMC MOLECULAR BIOLOGY

Therapeutic Implications of Cellular Heterogeneity and Plasticity in Breast Cancer

(2015) Michael D. Brooks et al.   Cell Stem Cell

Genome-Wide Studies Reveal that H3K4me3 Modification in Bivalent Genes Is Dynamically Regulated during the Pluripotent Cell Cycle and Stabilized upon Differentiation

(2015) Rodrigo A. Grandy et al.   MOLECULAR AND CELLULAR BIOLOGY

PANTHER version 10: expanded protein families and functions, and analysis tools

(2015) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Modeling of Cancer Stem Cell State Transitions Predicts Therapeutic Response

(2015) Mary E. Sehl et al.   PLoS One

ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

(2014) Li Shen et al.   BMC GENOMICS

Identification of coexistence of DNA methylation and H3K27me3 specifically in cancer cells as a promising target for epigenetic therapy

(2014) Hideyuki Takeshima et al.   CARCINOGENESIS

Reprogramming cancer cells to pluripotency

(2014) Stefan Stricker et al.   Epigenetics

Mammary stem cells and the differentiation hierarchy: current status and perspectives

(2014) J. E. Visvader et al.   GENES & DEVELOPMENT

Hallmarks of Aromatase Inhibitor Drug Resistance Revealed by Epigenetic Profiling in Breast Cancer

(2013) M. P. H. M. Jansen et al.   CANCER RESEARCH

Epigenetic Reprogramming in Cancer

(2013) M. L. Suva et al.   SCIENCE

The role of maintenance proteins in the preservation of epithelial cell identity during mammary gland remodeling and breast cancer initiation

(2013) Danila Coradini et al.   Chinese Journal of Cancer

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Slug and Sox9 Cooperatively Determine the Mammary Stem Cell State

(2012) Wenjun Guo et al.   CELL

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

Stochastic State Transitions Give Rise to Phenotypic Equilibrium in Populations of Cancer Cells

(2011) Piyush B. Gupta et al.   CELL

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Normal and neoplastic nonstem cells can spontaneously convert to a stem-like state

(2011) C. L. Chaffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic Regulation of Cell Type–Specific Expression Patterns in the Human Mammary Epithelium

(2011) Reo Maruyama et al.   PLoS Genetics

Multivalent epigenetic marks confer microenvironment-responsive epigenetic plasticity to ovarian cancer cells

(2010) Sharmila A. Bapat et al.   Epigenetics

An embryonic stem cell–like gene expression signature in poorly differentiated aggressive human tumors

(2008) Ittai Ben-Porath et al.   NATURE GENETICS

Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines

(2008) P. Romano et al.   NUCLEIC ACIDS RESEARCH