Extent and complexity of RNA processing in honey bee queen and worker caste development

RNA m6A Modification Functions in Larval Development and Caste Differentiation in Honeybee (Apis mellifera)

(2021) Miao Wang et al.   Cell Reports

Active genic machinery for epigenetic RNA modifications in bees

(2021) L. Bataglia et al.   INSECT MOLECULAR BIOLOGY

The full-length transcriptome of C. elegans using direct RNA sequencing

(2020) Nathan P. Roach et al.   GENOME RESEARCH

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification

(2020) Matthew T Parker et al.   eLife

Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns

(2020) Alison D. Tang et al.   Nature Communications

New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs

(2020) Shoudong Zhang et al.   NUCLEIC ACIDS RESEARCH

Full-length transcriptome analysis of Litopenaeus vannamei reveals transcript variants involved in the innate immune system

(2019) Xiujuan Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Nanopore native RNA sequencing of a human poly(A) transcriptome

(2019) Rachael E. Workman et al.   NATURE METHODS

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

FMLRC: Hybrid long read error correction using an FM-index

(2018) Jeremy R. Wang et al.   BMC BIOINFORMATICS

Extensive Differential Splicing Underlies Phenotypically Plastic Aphid Morphs

(2018) Mary E Grantham et al.   MOLECULAR BIOLOGY AND EVOLUTION

Alternative splicing associated with phenotypic plasticity in the bumble bee Bombus terrestris

(2018) J. Price et al.   MOLECULAR ECOLOGY

Highly parallel direct RNA sequencing on an array of nanopores

(2018) Daniel R Garalde et al.   NATURE METHODS

Phenotypically distinct female castes in honey bees are defined by alternative chromatin states during larval development

(2018) Marek Wojciechowski et al.   GENOME RESEARCH

TED-Seq Identifies the Dynamics of Poly(A) Length during ER Stress

(2018) Yu Mi Woo et al.   Cell Reports

The multitasking polyA tail: nuclear RNA maturation, degradation and export

(2018) Agnieszka Tudek et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Uncovering the Changing Gene Expression Profile of Honeybee (Apis mellifera) Worker Larvae Transplanted to Queen Cells

(2018) Ling Yin et al.   Frontiers in Genetics

A comparison of honeybee (Apis mellifera ) queen, worker and drone larvae by RNA-Seq

(2017) Xu-Jiang He et al.   Insect Science

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Integration of lncRNA–miRNA–mRNA reveals novel insights into oviposition regulation in honey bees

(2017) Xiao Chen et al.   PeerJ

mTAIL-seq reveals dynamic poly(A) tail regulation in oocyte-to-embryo development

(2016) Jaechul Lim et al.   GENES & DEVELOPMENT

Notch signalling mediates reproductive constraint in the adult worker honeybee

(2016) Elizabeth J. Duncan et al.   Nature Communications

MicroRNAs in Honey Bee Caste Determination

(2016) Regan Ashby et al.   Scientific Reports

Differential expression of miRNAs related to caste differentiation in the honey bee, Apis mellifera

(2015) Xiangqian Guo et al.   APIDOLOGIE

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

A dietary phytochemical alters caste-associated gene expression in honey bees

(2015) W. Mao et al.   Science Advances

Developmental regulation of ecdysone receptor (EcR) and EcR-controlled gene expression during pharate-adult development of honeybees (Apis mellifera)

(2014) Tathyana R. P. Mello et al.   Frontiers in Genetics

Biased gene expression in early honeybee larval development

(2013) Rosannah C Cameron et al.   BMC GENOMICS

More than royal food - Major royal jelly protein genes in sexuals and workers of the honeybee Apis mellifera

(2013) Anja Buttstedt et al.   Frontiers in Zoology

Complexity of the Alternative Splicing Landscape in Plants

(2013) A. S. N. Reddy et al.   PLANT CELL

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

Transcriptome comparison between honey bee queen- and worker-destined larvae

(2012) Xuan Chen et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

TrueSight: a new algorithm for splice junction detection using RNA-seq

(2012) Yang Li et al.   NUCLEIC ACIDS RESEARCH

DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees

(2012) S. Foret et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone deacetylase inhibitor activity in royal jelly might facilitate caste switching in bees

(2011) Astrid Spannhoff et al.   EMBO REPORTS

IRS and TOR nutrient-signaling pathways act via juvenile hormone to influence honey bee caste fate

(2011) N. S. Mutti et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Honey Bee PTEN – Description, Developmental Knockdown, and Tissue-Specific Expression of Splice-Variants Correlated with Alternative Social Phenotypes

(2011) Navdeep S. Mutti et al.   PLoS One

Epigenetic integration of environmental and genomic signals in honey bees: the critical interplay of nutritional, brain and reproductive networks

(2010) Ryszard Maleszka   Epigenetics

RNA editing: a driving force for adaptive evolution?

(2009) Willemijn M. Gommans et al.   BIOESSAYS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

(2009) NADIA AUBIN-HORTH et al.   MOLECULAR ECOLOGY

The caste- and age-specific expression signature of honeybee heat shock genes shows an alternative splicing-dependent regulation of Hsp90

(2008) Randi. M. Aamodt   MECHANISMS OF AGEING AND DEVELOPMENT

Nutritional Control of Reproductive Status in Honeybees via DNA Methylation

(2008) R. Kucharski et al.   SCIENCE